7KH0

Cryo-EM structure of the human arginine vasopressin AVP-vasopressin receptor V2R-Gs signaling complex

PDB DOI: https://doi.org/10.2210/pdb7KH0/pdb
EM Map EMD-22872: EMDB EMDataResource

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens, Lama glama
Expression System: Homo sapiens, Spodoptera frugiperda, Escherichia coli
Mutation(s): Yes
Membrane Protein: Yes OPMPDBTMMemProtMD

Deposited: 2020-10-19 Released: 2021-05-26
Deposition Author(s): Wang, L., Xu, J., Gao, S., Sun, D., Liu, H., Liu, Z., Du, Y., Zhang, C.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Cryo-EM structure of the AVP-vasopressin receptor 2-G s signaling complex.

Wang, L., Xu, J., Cao, S., Sun, D., Liu, H., Lu, Q., Liu, Z., Du, Y., Zhang, C.

(2021) Cell Res 31: 932-934

PubMed: 33664408 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41422-021-00483-z
Primary Citation of Related Structures:
7KH0

Organizational Affiliation

Kobilka Institute of Innovative Drug Discovery, School of Life and Health Sciences, Chinese University of Hong Kong, Shenzhen, Guangdong, 518172, China.

Macromolecule Content

Total Structure Weight: 173.94 kDa
Atom Count: 9,898
Modelled Residue Count: 1,274
Deposited Residue Count: 1,570
Unique protein chains: 7

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vasopressin V2 receptor	A [auth R]	389	Homo sapiens	Mutation(s): 0 Gene Names: AVPR2, ADHR, DIR, DIR3, V2R Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P30518 (Homo sapiens) Explore P30518 Go to UniProtKB: P30518
PHAROS: P30518 GTEx: ENSG00000126895
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P30518
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	B	350	Homo sapiens	Mutation(s): 0 Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873 Go to UniProtKB: P62873
PHAROS: P62873 GTEx: ENSG00000078369
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P62873
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(i) subunit alpha-3, Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short fusion	C [auth A]	372	Homo sapiens	Mutation(s): 0 Gene Names: GNAI3, GNAS, GNAS1, GSP EC: 3.6.5 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens) Explore P63092 Go to UniProtKB: P63092
PHAROS: P63092 GTEx: ENSG00000087460
Find proteins for P08754 (Homo sapiens) Explore P08754 Go to UniProtKB: P08754
PHAROS: P08754 GTEx: ENSG00000065135
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P63092P08754
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Arg-vasopressin	D [auth L]	10	Homo sapiens	Mutation(s): 1 Gene Names: AVP, ARVP, VP Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P01185 (Homo sapiens) Explore P01185 Go to UniProtKB: P01185
PHAROS: P01185 GTEx: ENSG00000101200
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P01185
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	E [auth G]	67	Homo sapiens	Mutation(s): 0 Gene Names: GNG2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768 Go to UniProtKB: P59768
PHAROS: P59768 GTEx: ENSG00000186469
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P59768
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Single Fab chain (scFv16)	F [auth S]	248	Homo sapiens	Mutation(s): 0
Entity Groups
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Nanobody 35	G [auth N]	134	Lama glama	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence