7K3V

Apoferritin structure at 1.34 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with K3 detector


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Resolving individual atoms of protein complex by cryo-electron microscopy.

Zhang, K.Pintilie, G.D.Li, S.Schmid, M.F.Chiu, W.

(2020) Cell Res 30: 1136-1139


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferritin heavy chain
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
172Homo sapiensMutation(s): 0 
Gene Names: FTH1FTHFTHL6OK/SW-cl.84PIG15
EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens)
Explore P02794 
Go to UniProtKB:  P02794
PHAROS:  P02794
GTEx:  ENSG00000167996 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02794
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth A]
AD [auth F]
AE [auth H]
AG [auth L]
AI [auth O]
AA [auth A],
AD [auth F],
AE [auth H],
AG [auth L],
AI [auth O],
AJ [auth Q],
AK [auth S],
AL [auth U],
BA [auth A],
BB [auth B],
BC [auth D],
BD [auth F],
BF [auth J],
BG [auth L],
BH [auth M],
BJ [auth Q],
BK [auth S],
BL [auth U],
BM [auth W],
CA [auth A],
CB [auth C],
CC [auth D],
CD [auth F],
CE [auth H],
CF [auth J],
CG [auth L],
CI [auth O],
CJ [auth Q],
CK [auth S],
CL [auth U],
CM [auth W],
DB [auth C],
DC [auth D],
DD [auth F],
DE [auth H],
DG [auth L],
DI [auth P],
DJ [auth Q],
DK [auth S],
DL [auth U],
DM [auth W],
EA [auth A],
EB [auth C],
ED [auth F],
EE [auth H],
EF [auth J],
EH [auth N],
EI [auth P],
EJ [auth R],
EK [auth S],
EL [auth U],
EM [auth W],
FA [auth A],
FB [auth C],
FC [auth D],
FD [auth F],
FF [auth J],
FG [auth L],
FH [auth N],
FJ [auth R],
FK [auth T],
FL [auth U],
FM [auth W],
GA [auth A],
GB [auth C],
GC [auth E],
GD [auth F],
GE [auth H],
GF [auth J],
GG [auth L],
GI [auth P],
GM [auth W],
HC [auth E],
HD [auth F],
HE [auth H],
HF [auth J],
HG [auth L],
HH [auth N],
HI [auth P],
HJ [auth R],
HK [auth T],
HL [auth V],
HM [auth X],
IA [auth A],
IB [auth C],
IC [auth E],
IE [auth H],
IF [auth J],
IH [auth N],
IK [auth T],
IL [auth V],
IM [auth X],
JA [auth A],
JB [auth C],
JC [auth E],
JD [auth G],
JF [auth J],
JG [auth L],
JH [auth N],
JJ [auth R],
JL [auth V],
KA [auth A],
KB [auth C],
KD [auth G],
KE [auth H],
KF [auth J],
KG [auth L],
KH [auth N],
KI [auth P],
KK [auth T],
KM [auth X],
LC [auth E],
LD [auth G],
LE [auth I],
LF [auth J],
LG [auth L],
LH [auth N],
LI [auth P],
LL [auth V],
LM [auth X],
MA [auth A],
MB [auth C],
MC [auth E],
MD [auth G],
ME [auth I],
MH [auth N],
MI [auth P],
MJ [auth R],
NA [auth B],
NB [auth C],
NC [auth E],
ND [auth G],
NE [auth I],
NF [auth K],
NG [auth L],
NH [auth N],
NI [auth P],
NJ [auth R],
NK [auth T],
OA [auth B],
OB [auth C],
OE [auth I],
OF [auth K],
OH [auth N],
OI [auth P],
OJ [auth R],
OK [auth T],
OL [auth V],
OM [auth X],
PA [auth B],
PC [auth E],
PD [auth G],
PF [auth K],
PG [auth M],
PH [auth O],
PI [auth P],
PJ [auth R],
PK [auth T],
PL [auth V],
PM [auth X],
QA [auth B],
QB [auth C],
QC [auth E],
QD [auth G],
QE [auth I],
QF [auth K],
QG [auth M],
QI [auth Q],
QJ [auth R],
QK [auth T],
QL [auth V],
QM [auth X],
RA [auth B],
RB [auth D],
RC [auth E],
RE [auth I],
RF [auth K],
RG [auth M],
RH [auth O],
RJ [auth R],
RK [auth T],
RL [auth V],
RM [auth X],
SB [auth D],
SD [auth G],
SE [auth I],
SG [auth M],
SH [auth O],
SI [auth Q],
SJ [auth S],
SK [auth T],
SL [auth V],
SM [auth X],
TA [auth B],
TB [auth D],
TC [auth E],
TD [auth G],
TF [auth K],
TG [auth M],
TH [auth O],
TI [auth Q],
TJ [auth S],
TK [auth U],
TL [auth V],
TM [auth X],
UA [auth B],
UB [auth D],
UE [auth I],
UF [auth K],
UH [auth O],
UK [auth U],
UL [auth W],
VA [auth B],
VB [auth D],
VD [auth G],
VE [auth I],
VG [auth M],
VI [auth Q],
VJ [auth S],
VL [auth W],
WC [auth F],
WD [auth H],
WE [auth I],
WF [auth K],
WG [auth M],
WH [auth O],
WJ [auth S],
WK [auth U],
XA [auth B],
XB [auth D],
XC [auth F],
XD [auth H],
XF [auth K],
XH [auth O],
XK [auth U],
XL [auth W],
Y [auth A],
YA [auth B],
YB [auth D],
YD [auth H],
YE [auth I],
YG [auth M],
YI [auth Q],
YL [auth W],
Z [auth A],
ZA [auth B],
ZB [auth D],
ZC [auth F],
ZD [auth H],
ZF [auth K],
ZG [auth M],
ZH [auth O],
ZI [auth Q],
ZJ [auth S]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
AB [auth B]
AC [auth D]
AF [auth J]
AH [auth M]
AM [auth W]
AB [auth B],
AC [auth D],
AF [auth J],
AH [auth M],
AM [auth W],
BE [auth H],
BI [auth O],
CH [auth N],
DA [auth A],
DF [auth J],
DH [auth N],
EC [auth D],
EG [auth L],
FE [auth H],
FI [auth P],
GH [auth N],
GJ [auth R],
GK [auth T],
GL [auth V],
HA [auth A],
HB [auth C],
ID [auth G],
IG [auth L],
II [auth P],
IJ [auth R],
JE [auth H],
JI [auth P],
JK [auth T],
JM [auth X],
KC [auth E],
KJ [auth R],
KL [auth V],
LA [auth A],
LB [auth C],
LJ [auth R],
LK [auth T],
MF [auth K],
MG [auth L],
MK [auth T],
ML [auth V],
MM [auth X],
NL [auth V],
NM [auth X],
OC [auth E],
OD [auth G],
OG [auth M],
PB [auth C],
PE [auth I],
QH [auth O],
RD [auth G],
RI [auth Q],
SA [auth B],
SC [auth E],
SF [auth K],
TE [auth I],
UC [auth F],
UD [auth G],
UG [auth M],
UI [auth Q],
UJ [auth S],
VC [auth F],
VF [auth K],
VH [auth O],
VK [auth U],
WA [auth B],
WB [auth D],
WI [auth Q],
WL [auth W],
XE [auth I],
XG [auth M],
XI [auth Q],
XJ [auth S],
YC [auth F],
YF [auth K],
YH [auth O],
YJ [auth S],
YK [auth U],
ZE [auth J],
ZK [auth U],
ZL [auth W]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.18.2_3874

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM129564
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM079429
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41GM103832

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-18
    Type: Initial release
  • Version 1.1: 2020-11-25
    Changes: Data collection, Refinement description
  • Version 1.2: 2020-12-23
    Changes: Database references
  • Version 1.3: 2024-03-06
    Changes: Data collection, Database references, Refinement description