7RRP

Apoferritin structure at 1.27 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Resolving individual atoms of protein complex by cryo-electron microscopy.

Zhang, K.Pintilie, G.D.Li, S.Schmid, M.F.Chiu, W.

(2020) Cell Res 30: 1136-1139


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferritin heavy chain
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
172Homo sapiensMutation(s): 0 
Gene Names: FTH1FTHFTHL6OK/SW-cl.84PIG15
EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P02794 (Homo sapiens)
Explore P02794 
Go to UniProtKB:  P02794
PHAROS:  P02794
GTEx:  ENSG00000167996 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02794
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth A]
AB [auth C]
AC [auth E]
AD [auth G]
AE [auth I]
AA [auth A],
AB [auth C],
AC [auth E],
AD [auth G],
AE [auth I],
AG [auth N],
AH [auth P],
AJ [auth U],
AK [auth W],
BA [auth A],
BB [auth C],
BC [auth E],
BD [auth G],
BF [auth K],
BG [auth N],
BH [auth P],
BJ [auth U],
CA [auth A],
CB [auth C],
CC [auth E],
CF [auth L],
CG [auth N],
CI [auth S],
CJ [auth U],
DA [auth A],
DB [auth C],
DC [auth E],
DE [auth I],
DF [auth L],
DG [auth N],
DI [auth S],
DJ [auth U],
EC [auth E],
ED [auth G],
EF [auth L],
EG [auth N],
EH [auth P],
EI [auth S],
EJ [auth U],
EK [auth W],
FB [auth C],
FE [auth I],
FF [auth L],
FG [auth N],
FI [auth S],
FK [auth X],
GA [auth A],
GC [auth E],
GD [auth G],
GE [auth J],
GF [auth L],
GH [auth Q],
GI [auth S],
GK [auth X],
HD [auth H],
HE [auth J],
HF [auth L],
HH [auth Q],
HI [auth S],
HJ [auth U],
HK [auth X],
IA [auth A],
IB [auth C],
ID [auth H],
IE [auth J],
IF [auth L],
IH [auth Q],
II [auth S],
IK [auth X],
JA [auth A],
JB [auth C],
JC [auth E],
JD [auth H],
JE [auth J],
JG [auth N],
JH [auth Q],
JJ [auth V],
JK [auth X],
KA [auth A],
KB [auth C],
KC [auth F],
KD [auth H],
KE [auth J],
KG [auth O],
KH [auth Q],
KI [auth S],
KJ [auth V],
KK [auth X],
LA [auth B],
LB [auth D],
LC [auth F],
LD [auth H],
LE [auth J],
LG [auth O],
LH [auth Q],
LJ [auth V],
LK [auth X],
MA [auth B],
MB [auth D],
MC [auth F],
MD [auth H],
ME [auth J],
MF [auth L],
MG [auth O],
MH [auth Q],
MJ [auth V],
NA [auth B],
NB [auth D],
NC [auth F],
ND [auth H],
NF [auth L],
NG [auth O],
NI [auth T],
NJ [auth V],
NK [auth X],
OA [auth B],
OB [auth D],
OC [auth F],
OF [auth M],
OG [auth O],
OI [auth T],
OJ [auth V],
PA [auth B],
PB [auth D],
PC [auth F],
PE [auth J],
PF [auth M],
PG [auth O],
PI [auth T],
PJ [auth V],
QA [auth B],
QB [auth D],
QC [auth F],
QF [auth M],
QH [auth Q],
QI [auth T],
RB [auth D],
RC [auth F],
RD [auth H],
RE [auth K],
RF [auth M],
RH [auth R],
RI [auth T],
SA [auth B],
SD [auth H],
SE [auth K],
SF [auth M],
SG [auth O],
SH [auth R],
SI [auth T],
SJ [auth V],
TC [auth F],
TD [auth H],
TE [auth K],
TF [auth M],
TH [auth R],
TI [auth T],
UD [auth I],
UE [auth K],
UG [auth O],
UH [auth R],
UJ [auth W],
VA [auth B],
VB [auth D],
VD [auth I],
VE [auth K],
VG [auth P],
VH [auth R],
VI [auth T],
VJ [auth W],
WA [auth B],
WB [auth D],
WC [auth G],
WD [auth I],
WE [auth K],
WG [auth P],
WH [auth R],
WJ [auth W],
XA [auth B],
XB [auth D],
XC [auth G],
XD [auth I],
XF [auth M],
XG [auth P],
XH [auth R],
XJ [auth W],
Y [auth A],
YA [auth C],
YB [auth E],
YC [auth G],
YD [auth I],
YF [auth M],
YG [auth P],
YI [auth U],
YJ [auth W],
Z [auth A],
ZA [auth C],
ZB [auth E],
ZC [auth G],
ZD [auth I],
ZE [auth K],
ZF [auth N],
ZG [auth P],
ZH [auth R],
ZI [auth U],
ZJ [auth W]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
AF [auth K]
AI [auth R]
BE [auth I]
BI [auth R]
BK [auth W]
AF [auth K],
AI [auth R],
BE [auth I],
BI [auth R],
BK [auth W],
CD [auth G],
CE [auth I],
CH [auth P],
CK [auth W],
DD [auth G],
DH [auth P],
DK [auth W],
EA [auth A],
EB [auth C],
EE [auth I],
FA [auth A],
FC [auth E],
FD [auth G],
FH [auth P],
FJ [auth U],
GB [auth C],
GG [auth N],
GJ [auth U],
HA [auth A],
HB [auth C],
HC [auth E],
HG [auth N],
IC [auth E],
IG [auth N],
IJ [auth U],
JF [auth L],
JI [auth S],
KF [auth L],
LF [auth L],
LI [auth S],
MI [auth S],
MK [auth X],
NE [auth J],
NH [auth Q],
OD [auth H],
OE [auth J],
OH [auth Q],
OK [auth X],
PD [auth H],
PH [auth Q],
PK [auth X],
QD [auth H],
QE [auth J],
QG [auth O],
QJ [auth V],
RA [auth B],
RG [auth O],
RJ [auth V],
SB [auth D],
SC [auth F],
TA [auth B],
TB [auth D],
TG [auth O],
TJ [auth V],
UA [auth B],
UB [auth D],
UC [auth F],
UF [auth M],
UI [auth T],
VC [auth F],
VF [auth M],
WF [auth M],
WI [auth T],
XE [auth K],
XI [auth T],
YE [auth K],
YH [auth R]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 1.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.18

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM129564
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM079429
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41GM103832

Revision History  (Full details and data files)

  • Version 1.0: 2021-08-18
    Type: Initial release
  • Version 1.1: 2021-08-25
    Changes: Database references
  • Version 1.2: 2024-06-05
    Changes: Data collection, Refinement description