7FV9

PanDDA analysis group deposition -- PHIP in complex with Z1004253138

• PDB DOI: https://doi.org/10.2210/pdb7FV9/pdb
• Deposition Group: G_1002265 (changed state) ExploreG_1002265

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-03-09 Released: 2023-03-29 
• Deposition Author(s): Grosjean, H., Tomlinson, C., Bradshaw, W.J., Koekemoer, L., Krojer, T., Fearon, D., Biggin, P.C., von Delft, F.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.17 Å
• R-Value Free: 0.227 
• R-Value Work: 0.185 
• R-Value Observed: 0.187 

Literature

PanDDA analysis group deposition

Grosjean, H., Tomlinson, C., Bradshaw, W.J., Koekemoer, L., Krojer, T., Fearon, D., Biggin, P.C., von Delft, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 17.96 kDa 
• Atom Count: 1,258 
• Modelled Residue Count: 121 
• Deposited Residue Count: 149 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PH-interacting protein	A	149	Homo sapiens	Mutation(s): 0  Gene Names: PHIP, DCAF14, WDR11
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WWQ0 (Homo sapiens) Explore Q8WWQ0  Go to UniProtKB:  Q8WWQ0
PHAROS:  Q8WWQ0 GTEx:  ENSG00000146247

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZLC (Subject of Investigation/LOI)	B [auth A]	4-(5-methylfuran-2-carbonyl)-N-[(thiophen-2-yl)methyl]piperazine-1-carboxamide C16 H19 N3 O3 S FSJIDIRPKORUPE-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.17 Å
• R-Value Free: 0.227 
• R-Value Work: 0.185 
• R-Value Observed: 0.187 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.711	α = 90
b = 27.47	β = 100.42
c = 56.685	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
REFMAC	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-03-29 
Deposition Author(s): Grosjean, H., Tomlinson, C., Bradshaw, W.J., Koekemoer, L., Krojer, T., Fearon, D., Biggin, P.C., von Delft, F.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	None

Revision History  

• Version 1.0: 2023-03-29
  Type: Initial release
  
• Version 1.1: 2024-05-22
  Changes: Data collection