7F9O

PSI-NDH supercomplex of Barley

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare.

Shen, L., Tang, K., Wang, W., Wang, C., Wu, H., Mao, Z., An, S., Chang, S., Kuang, T., Shen, J.R., Han, G., Zhang, X.

(2022) Nature 601: 649-654

  • DOI: https://doi.org/10.1038/s41586-021-04277-6
  • Primary Citation of Related Structures:  
    7EU3, 7EW6, 7EWK, 7F9O

  • PubMed Abstract: 

    The chloroplast NADH dehydrogenase-like (NDH) complex is composed of at least 29 subunits and has an important role in mediating photosystem I (PSI) cyclic electron transport (CET) 1-3 . The NDH complex associates with PSI to form the PSI-NDH supercomplex and fulfil its function. Here, we report cryo-electron microscopy structures of a PSI-NDH supercomplex from barley (Hordeum vulgare). The structures reveal that PSI-NDH is composed of two copies of the PSI-light-harvesting complex I (LHCI) subcomplex and one NDH complex. Two monomeric LHCI proteins, Lhca5 and Lhca6, mediate the binding of two PSI complexes to NDH. Ten plant chloroplast-specific NDH subunits are presented and their exact positions as well as their interactions with other subunits in NDH are elucidated. In all, this study provides a structural basis for further investigations on the functions and regulation of PSI-NDH-dependent CET.

    • Organizational Affiliation: 

    Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.


Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A1A,
OA [auth e]		750Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for S4Z1K7 (Hordeum vulgare subsp. spontaneum)
Explore S4Z1K7 
Go to UniProtKB:  S4Z1K7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z1K7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I P700 chlorophyll a apoprotein A2B,
PA [auth f]		734Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for S4Z289 (Hordeum vulgare subsp. spontaneum)
Explore S4Z289 
Go to UniProtKB:  S4Z289
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z289
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I iron-sulfur centerC,
QA [auth g]		81Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for S4YZ47 (Hordeum vulgare subsp. spontaneum)
Explore S4YZ47 
Go to UniProtKB:  S4YZ47
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4YZ47
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit II, chloroplasticD,
RA [auth h]		205Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P36213 (Hordeum vulgare)
Explore P36213 
Go to UniProtKB:  P36213
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36213
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IV, chloroplasticE,
SA [auth i]		147Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P13194 (Hordeum vulgare)
Explore P13194 
Go to UniProtKB:  P13194
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13194
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit III, chloroplasticF,
TA [auth j]		235Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P13192 (Hordeum vulgare)
Explore P13192 
Go to UniProtKB:  P13192
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13192
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VI, chloroplasticG [auth H],
UA [auth k]		143Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P20143 (Hordeum vulgare)
Explore P20143 
Go to UniProtKB:  P20143
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20143
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit VIIIH [auth I],
VA [auth l]		36Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for S4Z1D9 (Hordeum vulgare subsp. spontaneum)
Explore S4Z1D9 
Go to UniProtKB:  S4Z1D9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z1D9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit IXI [auth J],
WA [auth m]		42Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for S4Z1E9 (Hordeum vulgare subsp. spontaneum)
Explore S4Z1E9 
Go to UniProtKB:  S4Z1E9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z1E9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit psaK, chloroplasticJ [auth K],
XA [auth n]		131Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P36886 (Hordeum vulgare)
Explore P36886 
Go to UniProtKB:  P36886
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36886
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Photosystem I reaction center subunit XI, chloroplasticK [auth L],
YA [auth o]		209Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P23993 (Hordeum vulgare)
Explore P23993 
Go to UniProtKB:  P23993
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23993
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein Lhca1L [auth 1],
ZA [auth p]		247Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticM [auth 2]255Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q43485 (Hordeum vulgare)
Explore Q43485 
Go to UniProtKB:  Q43485
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ43485
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticAB [auth q],
N [auth 3]		269Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for F2DAN8 (Hordeum vulgare subsp. vulgare)
Explore F2DAN8 
Go to UniProtKB:  F2DAN8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2DAN8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein Lhca5O [auth 5]257Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit 1, chloroplasticP [auth G]346Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for P92432 (Hordeum vulgare)
Explore P92432 
Go to UniProtKB:  P92432
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP92432
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit 2, chloroplasticQ [auth M]483Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for S4Z268 (Hordeum vulgare subsp. spontaneum)
Explore S4Z268 
Go to UniProtKB:  S4Z268
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z268
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit 3, chloroplasticR [auth N]117Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for S4Z1L1 (Hordeum vulgare subsp. spontaneum)
Explore S4Z1L1 
Go to UniProtKB:  S4Z1L1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z1L1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase chain 4, chloroplasticS [auth O]499Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for S4Z8N2 (Hordeum vulgare subsp. spontaneum)
Explore S4Z8N2 
Go to UniProtKB:  S4Z8N2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z8N2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit 4L, chloroplasticT [auth P]100Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for S4Z1I1 (Hordeum vulgare subsp. spontaneum)
Explore S4Z1I1 
Go to UniProtKB:  S4Z1I1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z1I1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-plastoquinone oxidoreductase subunit 5U [auth Q]777Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for A0A7T7JN26 (Hordeum vulgare)
Explore A0A7T7JN26 
Go to UniProtKB:  A0A7T7JN26
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7T7JN26
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit 6, chloroplasticV [auth R]176Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for A0A4Y5SEJ9 (Hordeum vulgare subsp. spontaneum)
Explore A0A4Y5SEJ9 
Go to UniProtKB:  A0A4Y5SEJ9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A4Y5SEJ9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit H, chloroplasticW [auth S]383Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for S4Z272 (Hordeum vulgare subsp. spontaneum)
Explore S4Z272 
Go to UniProtKB:  S4Z272
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z272
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit I, chloroplasticX [auth T]165Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for A0A218LNN1 (Hordeum vulgare)
Explore A0A218LNN1 
Go to UniProtKB:  A0A218LNN1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A218LNN1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit J, chloroplasticY [auth U]159Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for Q7GT16 (Hordeum vulgare)
Explore Q7GT16 
Go to UniProtKB:  Q7GT16
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7GT16
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit K, chloroplasticZ [auth V]245Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 7.1.1
Membrane Entity: Yes 
UniProt
Find proteins for S4Z232 (Hordeum vulgare subsp. spontaneum)
Explore S4Z232 
Go to UniProtKB:  S4Z232
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4Z232
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit L, chloroplasticAA [auth W]192Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for F2CUR7 (Hordeum vulgare subsp. vulgare)
Explore F2CUR7 
Go to UniProtKB:  F2CUR7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2CUR7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit M, chloroplasticBA [auth X]213Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for F2D138 (Hordeum vulgare subsp. vulgare)
Explore F2D138 
Go to UniProtKB:  F2D138
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2D138
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
NAD(P)H-quinone oxidoreductase subunit N, chloroplasticCA [auth Y]233Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Unidentified stromal proteinDA [auth Z]61Hordeum vulgare subsp. spontaneumMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex L1EA [auth a]154Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex L2FA [auth b]216Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for F2CTW7 (Hordeum vulgare subsp. vulgare)
Explore F2CTW7 
Go to UniProtKB:  F2CTW7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2CTW7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex L2GA [auth c]227Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex L4HA [auth 4]130Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex L5IA [auth d]243Hordeum vulgare subsp. spontaneumMutation(s): 0 
EC: 5.2.1.8
UniProt
Find proteins for F2CTD7 (Hordeum vulgare subsp. vulgare)
Explore F2CTD7 
Go to UniProtKB:  F2CTD7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2CTD7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex B1JA [auth 6]469Hordeum vulgare subsp. spontaneumMutation(s): 0 
UniProt
Find proteins for F2D3G1 (Hordeum vulgare subsp. vulgare)
Explore F2D3G1 
Go to UniProtKB:  F2D3G1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2D3G1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex B2KA [auth 7]361Hordeum vulgare subsp. spontaneumMutation(s): 0 
UniProt
Find proteins for F2D932 (Hordeum vulgare subsp. vulgare)
Explore F2D932 
Go to UniProtKB:  F2D932
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2D932
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex B3LA [auth 8]119Hordeum vulgare subsp. spontaneumMutation(s): 0 
UniProt
Find proteins for F2DD79 (Hordeum vulgare subsp. vulgare)
Explore F2DD79 
Go to UniProtKB:  F2DD79
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2DD79
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex B4MA [auth 9]83Hordeum vulgare subsp. spontaneumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Photosynthetic NDH subunit of subcomplex B5NA [auth 0]155Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for F2DWH9 (Hordeum vulgare subsp. vulgare)
Explore F2DWH9 
Go to UniProtKB:  F2DWH9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2DWH9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein Lhca4BB [auth r]197Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9LKC7 (Hordeum vulgare)
Explore Q9LKC7 
Go to UniProtKB:  Q9LKC7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9LKC7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Chlorophyll a-b binding protein, chloroplasticCB [auth s]211Hordeum vulgare subsp. spontaneumMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for F2D0D5 (Hordeum vulgare subsp. vulgare)
Explore F2D0D5 
Go to UniProtKB:  F2D0D5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2D0D5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 12 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DGD
Query on DGD
Download Ideal Coordinates CCD File 
BF [auth B],
LN [auth m],
PF [auth J],
ZM [auth f]		DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
CHL
Query on CHL
Download Ideal Coordinates CCD File 
AP [auth q]
DH [auth 2]
EH [auth 2]
GH [auth 2]
HH [auth 2]
AP [auth q],
DH [auth 2],
EH [auth 2],
GH [auth 2],
HH [auth 2],
HQ [auth s],
IO [auth p],
IQ [auth s],
KO [auth p],
KQ [auth s],
MG [auth 1],
MH [auth 3],
MQ [auth s],
NO [auth p],
OG [auth 1],
QI [auth 5],
QP [auth r],
RG [auth 1],
RI [auth 5],
RP [auth r],
TI [auth 5],
TP [auth r],
ZH [auth 3]
CHLOROPHYLL B
C55 H70 Mg N4 O6
MWVCRINOIIOUAU-UYSPMESUSA-M
CLA
Query on CLA
Download Ideal Coordinates CCD File 
AC [auth A]
AE [auth B]
AH [auth 2]
AI [auth 3]
AJ [auth e]
AC [auth A],
AE [auth B],
AH [auth 2],
AI [auth 3],
AJ [auth e],
AK [auth e],
AM [auth f],
AO [auth p],
AQ [auth s],
BC [auth A],
BE [auth B],
BH [auth 2],
BI [auth 3],
BJ [auth e],
BK [auth e],
BL [auth f],
BM [auth f],
BO [auth p],
BP [auth q],
BQ [auth s],
CC [auth A],
CD [auth A],
CE [auth B],
CH [auth 2],
CI [auth 3],
CJ [auth e],
CK [auth e],
CM [auth f],
CO [auth p],
CP [auth q],
CQ [auth s],
DC [auth A],
DE [auth B],
DJ [auth e],
DK [auth e],
DL [auth f],
DM [auth f],
DO [auth p],
DP [auth q],
DQ [auth s],
EB [auth A],
EC [auth A],
ED [auth B],
EE [auth B],
EG [auth 1],
EJ [auth e],
EK [auth e],
EL [auth f],
EM [auth f],
EN [auth j],
EO [auth p],
EQ [auth s],
FB [auth A],
FC [auth A],
FD [auth B],
FE [auth B],
FG [auth 1],
FH [auth 2],
FJ [auth e],
FK [auth e],
FL [auth f],
FM [auth f],
FO [auth p],
FQ [auth s],
GB [auth A],
GC [auth A],
GD [auth B],
GE [auth B],
GG [auth 1],
GJ [auth e],
GK [auth e],
GL [auth f],
GM [auth f],
GO [auth p],
GQ [auth s],
HB [auth A],
HC [auth A],
HD [auth B],
HE [auth B],
HF [auth F],
HG [auth 1],
HI [auth 5],
HJ [auth e],
HK [auth e],
HL [auth f],
HM [auth f],
HO [auth p],
HP [auth r],
IB [auth A],
IC [auth A],
ID [auth B],
IE [auth B],
IF [auth F],
IG [auth 1],
II [auth 5],
IJ [auth e],
IK [auth e],
IL [auth f],
IM [auth f],
IN [auth m],
IP [auth r],
JB [auth A],
JC [auth A],
JD [auth B],
JE [auth B],
JG [auth 1],
JI [auth 5],
JJ [auth e],
JK [auth e],
JL [auth f],
JM [auth f],
JN [auth m],
JO [auth p],
JP [auth r],
JQ [auth s],
KB [auth A],
KC [auth A],
KD [auth B],
KE [auth B],
KG [auth 1],
KI [auth 5],
KJ [auth e],
KK [auth e],
KL [auth f],
KM [auth f],
KP [auth r],
LB [auth A],
LC [auth A],
LD [auth B],
LE [auth B],
LG [auth 1],
LH [auth 3],
LI [auth 5],
LJ [auth e],
LK [auth e],
LL [auth f],
LM [auth f],
LO [auth p],
LP [auth r],
MB [auth A],
MC [auth A],
MD [auth B],
ME [auth B],
MI [auth 5],
MJ [auth e],
MK [auth e],
ML [auth f],
MM [auth f],
MP [auth r],
NB [auth A],
NC [auth A],
ND [auth B],
NE [auth B],
NF [auth J],
NG [auth 1],
NI [auth 5],
NJ [auth e],
NK [auth e],
NL [auth f],
NM [auth f],
NN [auth n],
NP [auth r],
OB [auth A],
OC [auth A],
OD [auth B],
OE [auth B],
OI [auth 5],
OJ [auth e],
OL [auth f],
OM [auth f],
ON [auth n],
OP [auth r],
PB [auth A],
PC [auth A],
PD [auth B],
PE [auth B],
PG [auth 1],
PI [auth 5],
PJ [auth e],
PK [auth e],
PL [auth f],
PM [auth f],
PN [auth n],
PP [auth r],
QB [auth A],
QC [auth A],
QD [auth B],
QE [auth B],
QF [auth K],
QH [auth 3],
QJ [auth e],
QL [auth f],
QM [auth f],
RB [auth A],
RD [auth B],
RE [auth B],
RF [auth K],
RH [auth 3],
RJ [auth e],
RL [auth f],
RM [auth f],
RN [auth n],
RO [auth q],
SB [auth A],
SC [auth A],
SD [auth B],
SE [auth B],
SF [auth K],
SH [auth 3],
SI [auth 5],
SJ [auth e],
SL [auth f],
SO [auth q],
SP [auth r],
TB [auth A],
TD [auth B],
TE [auth B],
TH [auth 3],
TJ [auth e],
TL [auth f],
TN [auth o],
TO [auth q],
UB [auth A],
UD [auth B],
UF [auth K],
UH [auth 3],
UJ [auth e],
UL [auth f],
UN [auth o],
UO [auth q],
UP [auth r],
VB [auth A],
VD [auth B],
VF [auth L],
VG [auth 2],
VH [auth 3],
VJ [auth e],
VL [auth f],
VN [auth o],
VO [auth q],
WB [auth A],
WD [auth B],
WF [auth L],
WG [auth 2],
WH [auth 3],
WJ [auth e],
WL [auth f],
WO [auth q],
XB [auth A],
XD [auth B],
XF [auth L],
XG [auth 2],
XH [auth 3],
XJ [auth e],
XL [auth f],
XO [auth q],
YB [auth A],
YD [auth B],
YF [auth L],
YG [auth 2],
YH [auth 3],
YJ [auth e],
YK [auth e],
YL [auth f],
YO [auth q],
ZB [auth A],
ZD [auth B],
ZG [auth 2],
ZJ [auth e],
ZK [auth e],
ZL [auth f],
ZO [auth q],
ZP [auth s]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
CL0
Query on CL0
Download Ideal Coordinates CCD File 
DB [auth A],
ZI [auth e]		CHLOROPHYLL A ISOMER
C55 H72 Mg N4 O5
VIQFHHZSLDFWDU-DVXFRRMCSA-M
SQD
Query on SQD
Download Ideal Coordinates CCD File 
WI [auth Q],
XI [auth Q]		1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG
Query on LMG
Download Ideal Coordinates CCD File 
DI [auth 5]
JH [auth 2]
KF [auth F]
KH [auth 2]
LF [auth F]
DI [auth 5],
JH [auth 2],
KF [auth F],
KH [auth 2],
LF [auth F],
MN [auth m],
VP [auth r]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
LHG
Query on LHG
Download Ideal Coordinates CCD File 
AN [auth f]
CF [auth B]
IH [auth 2]
LQ [auth s]
MO [auth p]
AN [auth f],
CF [auth B],
IH [auth 2],
LQ [auth s],
MO [auth p],
QG [auth 1],
QK [auth e],
RK [auth e],
TC [auth A],
UC [auth A],
UI [auth O]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
XAT
Query on XAT
Download Ideal Coordinates CCD File 
GI [auth 5],
GP [auth r],
TG [auth 2],
XP [auth s]		(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O4
SZCBXWMUOPQSOX-WVJDLNGLSA-N
LUT
Query on LUT
Download Ideal Coordinates CCD File 
BG [auth 1]
CG [auth 1]
FI [auth 5]
FP [auth r]
NH [auth 3]
BG [auth 1],
CG [auth 1],
FI [auth 5],
FP [auth r],
NH [auth 3],
OH [auth 3],
OO [auth q],
PO [auth q],
SG [auth 2],
WP [auth s],
XN [auth p],
YN [auth p]
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
C40 H56 O2
KBPHJBAIARWVSC-NSIPBSJQSA-N
BCR
Query on BCR
Download Ideal Coordinates CCD File 
AF [auth B]
AG [auth L]
AL [auth e]
BD [auth A]
DD [auth A]
AF [auth B],
AG [auth L],
AL [auth e],
BD [auth A],
DD [auth A],
DF [auth B],
DG [auth 1],
DN [auth j],
EI [auth 5],
EP [auth r],
FN [auth j],
GF [auth F],
GN [auth l],
HN [auth l],
JF [auth F],
KN [auth m],
MF [auth I],
OF [auth J],
PH [auth 3],
QN [auth n],
QO [auth q],
SK [auth e],
SN [auth o],
TF [auth K],
TK [auth e],
TM [auth f],
UG [auth 2],
UK [auth e],
UM [auth f],
VC [auth A],
VE [auth B],
VI [auth Q],
VK [auth e],
VM [auth f],
WC [auth A],
WE [auth B],
WK [auth e],
WM [auth f],
WN [auth o],
XC [auth A],
XE [auth B],
XK [auth e],
XM [auth f],
YC [auth A],
YE [auth B],
YM [auth f],
YP [auth s],
ZC [auth A],
ZE [auth B],
ZF [auth L],
ZN [auth p]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
PQN
Query on PQN
Download Ideal Coordinates CCD File 
OK [auth e],
RC [auth A],
SM [auth f],
UE [auth B]		PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4
Query on SF4
Download Ideal Coordinates CCD File 
AD [auth A]
BN [auth g]
CL [auth f]
CN [auth g]
EF [auth C]
AD [auth A],
BN [auth g],
CL [auth f],
CN [auth g],
EF [auth C],
FF [auth C],
YI [auth 8]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaQYZDY-SSW-SMC003

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-22
    Type: Initial release
  • Version 1.1: 2022-02-09
    Changes: Database references
  • Version 1.2: 2024-10-16
    Changes: Data collection, Structure summary