7F2F | pdb_00007f2f

The complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.

• PDB DOI: https://doi.org/10.2210/pdb7F2F/pdb
• NAKB: 7F2F

• Classification: TRANSCRIPTION
• Organism(s): Saccharomyces cerevisiae S288C, synthetic construct
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-06-10 Released: 2021-10-13 
• Deposition Author(s): Gui, W.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 
  0.284 (Depositor), 0.291 (DCC) 
• R-Value Work: 
  0.246 (Depositor), 0.251 (DCC) 
• R-Value Observed: 
  0.248 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.

Gui, W., Xue, L., Yue, J., Kuang, Z., Jin, Y., Niu, L.

(2021) Acta Crystallogr F Struct Biol Commun 77: 341-347

• DOI: https://doi.org/10.1107/S2053230X21009250

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 40.9 kDa 
• Atom Count: 2,178 
• Modeled Residue Count: 213 
• Deposited Residue Count: 302 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine-rich protein TYE7	A, B	136	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: TYE7, SGC1, YOR344C, O6233
UniProt
Find proteins for P33122 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P33122  Go to UniProtKB:  P33122

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*AP*GP*AP*TP*CP*AP*TP*GP*TP*GP*TP*GP*CP*C)-3')	C [auth E]	15	synthetic construct

Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*GP*GP*GP*CP*AP*CP*AP*CP*AP*TP*GP*AP*TP*CP*T)-3')	D [auth H]	15	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free:  0.284 (Depositor), 0.291 (DCC) 
• R-Value Work:  0.246 (Depositor), 0.251 (DCC) 
• R-Value Observed: 0.248 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.025	α = 90
b = 73.025	β = 90
c = 181.782	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2021-10-13 
Deposition Author(s): Gui, W.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2021-10-13
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description