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The complex of DNA with the C-terminal domain of TYE7 from Saccharomyces cerevisiae.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AM9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 283 0.1M HEPES pH7.5, 10% w/v PEG 8000, 11% v/v ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.96 58.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.025 α = 90 b = 73.025 β = 90 c = 181.782 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.97853 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 67.76 99.9 0.995 33.15 17.9 16802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 0.876 2.05
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AM9 2.55 67.76 15898 838 99.71 0.2478 0.2459 0.2512 0.2838 0.2914 RANDOM 70.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.31 2.31 -4.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.76 r_dihedral_angle_4_deg 18.916 r_dihedral_angle_3_deg 16.773 r_dihedral_angle_1_deg 7.312 r_angle_refined_deg 1.884 r_angle_other_deg 1.227 r_chiral_restr 0.125 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.76 r_dihedral_angle_4_deg 18.916 r_dihedral_angle_3_deg 16.773 r_dihedral_angle_1_deg 7.312 r_angle_refined_deg 1.884 r_angle_other_deg 1.227 r_chiral_restr 0.125 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1544 Nucleic Acid Atoms 593 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing PDB_EXTRACT data extraction