Crystal structure of Schistosoma mansoni HDAC8 in complex with a formate molecule in the active site
Saccoccia, F., Giannaccari, M., Ruberti, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative histone deacetylase 1, 2,3 | 440 | Schistosoma mansoni | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A3Q0KJ63 (Schistosoma mansoni) Explore A0A3Q0KJ63  Go to UniProtKB:  A0A3Q0KJ63 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A3Q0KJ63 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG Query on PEG | G [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
FMT (Subject of Investigation/LOI) Query on FMT | F [auth A], H [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | |||
K Query on K | C [auth A], D [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 70.957 | α = 90 |
b = 70.957 | β = 90 |
c = 180.514 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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Regione Lazio (Italy) | Italy | A0375-2020-36575 |