7ZW1

Human PRPH2-ROM1 hetero-dimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo-EM structures of peripherin-2 and ROM1 suggest multiple roles in photoreceptor membrane morphogenesis.

El Mazouni, D.Gros, P.

(2022) Sci Adv 8: eadd3677-eadd3677

  • DOI: https://doi.org/10.1126/sciadv.add3677
  • Primary Citation of Related Structures:  
    7ZW1

  • PubMed Abstract: 

    Mammalian peripherin-2 (PRPH2) and rod outer segment membrane protein 1 (ROM1) are retina-specific tetraspanins that partake in the constant renewal of stacked membrane discs of photoreceptor cells that enable vision. Here, we present single-particle cryo-electron microscopy structures of solubilized PRPH2-ROM1 heterodimers and higher-order oligomers. High-risk PRPH2 and ROM1 mutations causing blindness map to the protein-dimer interface. Cysteine bridges connect dimers forming positive-curved oligomers, whereas negative-curved oligomers were observed occasionally. Hexamers and octamers exhibit a secondary micelle that envelopes four carboxyl-terminal helices, supporting a potential role in membrane remodeling. Together, the data indicate multiple structures for PRPH2-ROM1 in creating and maintaining compartmentalization of photoreceptor cells.


  • Organizational Affiliation

    Structural Biochemistry, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Netherlands.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peripherin-2353Homo sapiensMutation(s): 1 
Gene Names: PRPH2PRPHRDSTSPAN22
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P23942 (Homo sapiens)
Explore P23942 
Go to UniProtKB:  P23942
PHAROS:  P23942
GTEx:  ENSG00000112619 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23942
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Rod outer segment membrane protein 1352Homo sapiensMutation(s): 0 
Gene Names: ROM1TSPAN23
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q03395 (Homo sapiens)
Explore Q03395 
Go to UniProtKB:  Q03395
PHAROS:  Q03395
GTEx:  ENSG00000149489 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03395
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody132LamaMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European UnionBC.000795.1

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-16
    Type: Initial release