Download MendeleyCrystal structure of FLT3 in complex with a monomeric FLT3 Ligand variant
Pannecoucke, E., Savvides, S.N.To be published.
7ZV9 | pdb_00007zv9
7ZV9 | pdb_00007zv9
Crystal structure of FLT3 in complex with a monomeric FLT3 Ligand variant
- PDB DOI: https://doi.org/10.2210/pdb7ZV9/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3), Homo sapiens
- Mutation(s): Yes
- Deposited: 2022-05-14 Released: 2023-05-31
- Funding Organization(s): Research Foundation - Flanders (FWO)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 4.51 Å
- R-Value Free: 0.291 (Depositor), 0.280 (DCC)
- R-Value Work: 0.278 (Depositor), 0.287 (DCC)
- R-Value Observed: 0.278 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecule Content
- Total Structure Weight: 668.01 kDa
- Atom Count: 26,691
- Modeled Residue Count: 4,466
- Deposited Residue Count: 5,896
- Unique protein chains: 2
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fms-related tyrosine kinase 3 ligand | 155 | Homo sapiens | Mutation(s): 1 Gene Names: FLT3LG |  | |
UniProt & NIH Common Fund Data Resources | |||||
GTEx: ENSG00000090554 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P49771 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Find similar proteins by:
| 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Receptor-type tyrosine-protein kinase FLT3 | 582 | Homo sapiens | Mutation(s): 0 Gene Names: FLT3, CD135, FLK2, STK1 EC: 2.7.10.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
PHAROS: P36888 GTEx: ENSG00000122025 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P36888 | ||||
Glycosylation | |||||
| Glycosylation Sites: 2 | Go to GlyGen: P36888-1 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Oligosaccharides
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Download:Ideal Coordinates CCD File | W [auth B], X [auth B], Y [auth H], Z [auth P] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 4.51 Å
- R-Value Free: 0.291 (Depositor), 0.280 (DCC)
- R-Value Work: 0.278 (Depositor), 0.287 (DCC)
- R-Value Observed: 0.278 (Depositor)
Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.208 | α = 90.02 |
| b = 139.215 | β = 90.03 |
| c = 143.689 | γ = 89.99 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| PHENIX | refinement |
| XDS | data scaling |
| PHASER | phasing |
| Coot | model building |
| PDB-REDO | refinement |
Entry History
& Funding InformationDeposition Data
- Released Date: 2023-05-31 Deposition Author(s): Pannecoucke, E., Savvides, S.N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Research Foundation - Flanders (FWO) | Belgium | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-05-31
Type: Initial release - Version 1.1: 2024-02-07
Changes: Data collection, Refinement description - Version 1.2: 2024-10-23
Changes: Structure summary
