7ZSI

Structure of Orange Carotenoid Protein with canthaxanthin bound after 5 minutes of illumination


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.191 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Light activation of Orange Carotenoid Protein reveals bicycle-pedal single-bond isomerization.

Chukhutsina, V.U.Baxter, J.M.Fadini, A.Morgan, R.M.Pope, M.A.Maghlaoui, K.Orr, C.M.Wagner, A.van Thor, J.J.

(2022) Nat Commun 13: 6420-6420

  • DOI: https://doi.org/10.1038/s41467-022-34137-4
  • Primary Citation of Related Structures:  
    7ZSF, 7ZSG, 7ZSH, 7ZSI, 7ZSJ

  • PubMed Abstract: 

    Orange Carotenoid protein (OCP) is the only known photoreceptor which uses carotenoid for its activation. It is found exclusively in cyanobacteria, where it functions to control light-harvesting of the photosynthetic machinery. However, the photochemical reactions and structural dynamics of this unique photosensing process are not yet resolved. We present time-resolved crystal structures at second-to-minute delays under bright illumination, capturing the early photoproduct and structures of the subsequent reaction intermediates. The first stable photoproduct shows concerted isomerization of C9'-C8' and C7'-C6' single bonds in the bicycle-pedal (s-BP) manner and structural changes in the N-terminal domain with minute timescale kinetics. These are followed by a thermally-driven recovery of the s-BP isomer to the dark state carotenoid configuration. Structural changes propagate to the C-terminal domain, resulting, at later time, in the H-bond rupture of the carotenoid keto group with protein residues. Solution FTIR and UV/Vis spectroscopy support the single bond isomerization of the carotenoid in the s-BP manner and subsequent thermal structural reactions as the basis of OCP photoreception.


  • Organizational Affiliation

    Department of Life Sciences, Imperial College London, London, SW7 2AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Orange carotenoid-binding proteinA [auth 1]327SynechocystisMutation(s): 0 
Gene Names: slr1963
UniProt
Find proteins for P74102 (Synechocystis sp. (strain PCC 6803 / Kazusa))
Explore P74102 
Go to UniProtKB:  P74102
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP74102
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.191 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.78α = 90
b = 82.78β = 90
c = 87.604γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Molecular Biology Organization (EMBO)European UnionEMBO ALTF 244-2017
H2020 Marie Curie Actions of the European CommissionEuropean Union839389
Leverhulme TrustUnited KingdomRPG-2018-372
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/D524840/1
Wellcome TrustUnited Kingdom202926/Z/16/Z

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-09
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description