7ZM5 | pdb_00007zm5

Structure of Mossman virus receptor binding protein

  • Classification: VIRAL PROTEIN
  • Organism(s): Narmovirus mossmanense
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2022-04-19 Released: 2023-09-13 
  • Deposition Author(s): Stelfox, A.J., Bowden, T.A., Rissanen, I., Harlos, K.
  • Funding Organization(s): Medical Research Council (MRC, United Kingdom), Engineering and Physical Sciences Research Council, Academy of Finland, National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), Wellcome Trust

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 
    0.212 (Depositor), 0.210 (DCC) 
  • R-Value Work: 
    0.176 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 
    0.178 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

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This is version 1.4 of the entry. See complete history


Literature

Crystal structure and solution state of the C-terminal head region of the narmovirus receptor binding protein.

Stelfox, A.J.Oguntuyo, K.Y.Rissanen, I.Harlos, K.Rambo, R.Lee, B.Bowden, T.A.

(2023) mBio 14: e0139123-e0139123

  • DOI: https://doi.org/10.1128/mbio.01391-23
  • Primary Citation of Related Structures:  
    7ZM5, 7ZM6

  • PubMed Abstract: 

    Genetically diverse paramyxoviruses are united in their presentation of a receptor-binding protein (RBP), which works in concert with the fusion protein to facilitate host-cell entry. The C-terminal head region of the paramyxoviral RBP, a primary determinant of host-cell tropism and inter-species transmission potential, forms structurally distinct classes dependent upon protein and glycan receptor specificity. Here, we reveal the architecture of the C-terminal head region of the RBPs from Nariva virus (NarV) and Mossman virus (MosV), two archetypal rodent-borne paramyxoviruses within the recently established genus Narmovirus , family Paramyxoviridae . Our analysis reveals that while narmoviruses retain the general architectural features associated with paramyxoviral RBPs, namely, a six-bladed β-propeller fold, they lack the structural motifs associated with known receptor-mediated host-cell entry pathways. This investigation indicates that the RBPs of narmoviruses exhibit pathobiological features that are distinct from those of other paramyxoviruses.


  • Organizational Affiliation

    Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford , Oxford, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Attachment glycoprotein
A, B
632Narmovirus mossmanenseMutation(s): 0 
UniProt
Find proteins for Q6WGM0 (Mossman virus)
Explore Q6WGM0 
Go to UniProtKB:  Q6WGM0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6WGM0
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
C [auth A]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free:  0.212 (Depositor), 0.210 (DCC) 
  • R-Value Work:  0.176 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 0.178 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.2α = 90
b = 83.93β = 90
c = 122.12γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
AutoSolphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted NAGClick on this verticalbar to view details

Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/L009528/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/S007555/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/K503113/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/L505031/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/M50659X/1
Engineering and Physical Sciences Research CouncilUnited KingdomEP/M508111/1
Academy of FinlandFinland309605
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI123449
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI069317
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI115226
Wellcome TrustUnited Kingdom203141/Z/16Z

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Data collection
  • Version 1.2: 2023-10-04
    Changes: Database references
  • Version 1.3: 2023-11-29
    Changes: Database references
  • Version 1.4: 2024-11-06
    Changes: Structure summary