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 7ZL4 | pdb_00007zl4

Cryo-EM structure of archaic chaperone-usher Csu pilus of Acinetobacter baumannii


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7ZL4

This is version 1.2 of the entry. See complete history. 

Literature

Archaic chaperone-usher pili self-secrete into superelastic zigzag springs.

Pakharukova, N., Malmi, H., Tuittila, M., Dahlberg, T., Ghosal, D., Chang, Y.W., Myint, S.L., Paavilainen, S., Knight, S.D., Lamminmaki, U., Uhlin, B.E., Andersson, M., Jensen, G., Zavialov, A.V.

(2022) Nature 609: 335-340

  • DOI: https://doi.org/10.1038/s41586-022-05095-0
  • Primary Citation Related Structures: 
    7ZL4

  • PubMed Abstract: 

    Adhesive pili assembled through the chaperone-usher pathway are hair-like appendages that mediate host tissue colonization and biofilm formation of Gram-negative bacteria 1-3 . Archaic chaperone-usher pathway pili, the most diverse and widespread chaperone-usher pathway adhesins, are promising vaccine and drug targets owing to their prevalence in the most troublesome multidrug-resistant pathogens 1,4,5 . However, their architecture and assembly-secretion process remain unknown. Here, we present the cryo-electron microscopy structure of the prototypical archaic Csu pilus that mediates biofilm formation of Acinetobacter baumannii-a notorious multidrug-resistant nosocomial pathogen. In contrast to the thick helical tubes of the classical type 1 and P pili, archaic pili assemble into an ultrathin zigzag architecture secured by an elegant clinch mechanism. The molecular clinch provides the pilus with high mechanical stability as well as superelasticity, a property observed for the first time, to our knowledge, in biomolecules, while enabling a more economical and faster pilus production. Furthermore, we demonstrate that clinch formation at the cell surface drives pilus secretion through the outer membrane. These findings suggest that clinch-formation inhibitors might represent a new strategy to fight multidrug-resistant bacterial infections.


  • Organizational Affiliation: 
    • Joint Biotechnology Laboratory, MediCity, Faculty of Medicine, University of Turku, Turku, Finland.

Macromolecule Content 

  • Total Structure Weight: 64.28 kDa 
  • Atom Count: 3,387 
  • Modeled Residue Count: 465 
  • Deposited Residue Count: 620 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CsuA/B
A, B, C, D
155Acinetobacter baumanniiMutation(s): 0 
Gene Names: ATCC19606_12570
UniProt
Find proteins for A0A6F8TDQ5 (Acinetobacter baumannii)
Explore A0A6F8TDQ5 
Go to UniProtKB:  A0A6F8TDQ5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6F8TDQ5
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.8
MODEL REFINEMENTPHENIX1.8.2

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of FinlandFinland273075
Sigrid Juselius FoundationFinland--

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-03
    Type: Initial release
  • Version 1.1: 2022-09-21
    Changes: Database references
  • Version 1.2: 2024-10-23
    Changes: Data collection, Refinement description, Structure summary