7ZJ2

Amyloid fibril (in vitro) from full-length hnRNPA1 protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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This is version 1.2 of the entry. See complete history


Literature

Cryo-EM Structure of the Full-length hnRNPA1 Amyloid Fibril.

Sharma, K.Banerjee, S.Savran, D.Rajes, C.Wiese, S.Girdhar, A.Schwierz, N.Lee, C.Shorter, J.Schmidt, M.Guo, L.Fandrich, M.

(2023) J Mol Biol 435: 168211-168211

  • DOI: https://doi.org/10.1016/j.jmb.2023.168211
  • Primary Citation of Related Structures:  
    7ZJ2

  • PubMed Abstract: 

    Heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) is a multifunctional RNA-binding protein that is associated with neurodegenerative diseases, such as amyotrophic lateral sclerosis and multisystem proteinopathy. In this study, we have used cryo-electron microscopy to investigate the three-dimensional structure of amyloid fibrils from full-length hnRNPA1 protein. We find that the fibril core is formed by a 45-residue segment of the prion-like low-complexity domain of the protein, whereas the remaining parts of the protein (275 residues) form a fuzzy coat around the fibril core. The fibril consists of two fibril protein stacks that are arranged into a pseudo-2 1 screw symmetry. The ordered core harbors several of the positions that are known to be affected by disease-associated mutations, but does not encompass the most aggregation-prone segments of the protein. These data indicate that the structures of amyloid fibrils from full-length proteins may be more complex than anticipated by current theories on protein misfolding.


  • Organizational Affiliation

    Institute of Protein Biochemistry, Ulm University, 89081 Ulm, Germany. Electronic address: kartikay.sharma@uni-ulm.de.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform A1-A of Heterogeneous nuclear ribonucleoprotein A1
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
320Homo sapiensMutation(s): 0 
Gene Names: HNRNPA1HNRPA1
UniProt & NIH Common Fund Data Resources
Find proteins for P09651 (Homo sapiens)
Explore P09651 
Go to UniProtKB:  P09651
PHAROS:  P09651
GTEx:  ENSG00000135486 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09651
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18-3874
RECONSTRUCTIONRELION3.1.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-02
    Type: Initial release
  • Version 1.1: 2023-08-09
    Changes: Database references
  • Version 1.2: 2024-07-24
    Changes: Data collection, Refinement description