7ZHA

Structure of human OCT3 in complex with inhibitor decynium-22


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of organic cation transporter-3 inhibition.

Khanppnavar, B.Maier, J.Herborg, F.Gradisch, R.Lazzarin, E.Luethi, D.Yang, J.W.Qi, C.Holy, M.Jantsch, K.Kudlacek, O.Schicker, K.Werge, T.Gether, U.Stockner, T.Korkhov, V.M.Sitte, H.H.

(2022) Nat Commun 13: 6714-6714

  • DOI: https://doi.org/10.1038/s41467-022-34284-8
  • Primary Citation of Related Structures:  
    7ZH0, 7ZH6, 7ZHA

  • PubMed Abstract: 

    Organic cation transporters (OCTs) facilitate the translocation of catecholamines, drugs and xenobiotics across the plasma membrane in various tissues throughout the human body. OCT3 plays a key role in low-affinity, high-capacity uptake of monoamines in most tissues including heart, brain and liver. Its deregulation plays a role in diseases. Despite its importance, the structural basis of OCT3 function and its inhibition has remained enigmatic. Here we describe the cryo-EM structure of human OCT3 at 3.2 Å resolution. Structures of OCT3 bound to two inhibitors, corticosterone and decynium-22, define the ligand binding pocket and reveal common features of major facilitator transporter inhibitors. In addition, we relate the functional characteristics of an extensive collection of previously uncharacterized human genetic variants to structural features, thereby providing a basis for understanding the impact of OCT3 polymorphisms.


  • Organizational Affiliation

    Laboratory of Biomolecular Research, Paul Scherrer Institute, Villigen, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 22 member 3556Homo sapiensMutation(s): 0 
Gene Names: SLC22A3EMTHOCT3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O75751 (Homo sapiens)
Explore O75751 
Go to UniProtKB:  O75751
PHAROS:  O75751
GTEx:  ENSG00000146477 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75751
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
JDW (Subject of Investigation/LOI)
Query on JDW

Download Ideal Coordinates CCD File 
B [auth A]1-ethyl-2-[(1-ethylquinolin-2-yl)methyl]quinoline
C23 H24 N2
LVEPVOGKAJXFDF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland198545

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-09
    Type: Initial release
  • Version 1.1: 2023-04-19
    Changes: Database references
  • Version 1.2: 2024-10-16
    Changes: Data collection, Structure summary