7Z6Q | pdb_00007z6q

Cryo-EM structure of the whole photosynthetic complex from the green sulfur bacteria

PDB DOI: https://doi.org/10.2210/pdb7Z6Q/pdb
EM Map EMD-14528: EMDB EMDataResource

Classification: PHOTOSYNTHESIS
Organism(s): Chlorobaculum tepidum TLS
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD mpstruc

Deposited: 2022-03-14 Released: 2023-02-08
Deposition Author(s): Xie, H., Tsiotis, G.
Funding Organization(s): Max Planck Society

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of the whole photosynthetic reaction center apparatus from the green sulfur bacterium Chlorobaculum tepidum.

Xie, H., Lyratzakis, A., Khera, R., Koutantou, M., Welsch, S., Michel, H., Tsiotis, G.

(2023) Proc Natl Acad Sci U S A 120: e2216734120-e2216734120

PubMed: 36693097 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1073/pnas.2216734120
Primary Citation Related Structures:
7Z6Q

PubMed Abstract:
Light energy absorption and transfer are very important processes in photosynthesis. In green sulfur bacteria light is absorbed primarily by the chlorosomes and its energy is transferred via the Fenna-Matthews-Olson (FMO) proteins to a homodimeric reaction center (RC). Here, we report the cryogenic electron microscopic structure of the intact FMO-RC apparatus from Chlorobaculum tepidum at 2.5 Å resolution. The FMO-RC apparatus presents an asymmetric architecture and contains two FMO trimers that show different interaction patterns with the RC core. Furthermore, the two permanently bound transmembrane subunits PscC, which donate electrons to the special pair, interact only with the two large PscA subunits. This structure fills an important gap in our understanding of the transfer of energy from antenna to the electron transport chain of this RC and the transfer of electrons from reduced sulfur compounds to the special pair.

Organizational Affiliation

Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt am Main D-60438, Germany.

Macromolecule Content

Total Structure Weight: 569.59 kDa
Atom Count: 36,557
Modeled Residue Count: 3,956
Deposited Residue Count: 4,444
Unique protein chains: 5

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem P840 reaction center, large subunit	A, K [auth a]	731	Chlorobaculum tepidum TLS	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for Q8KAY0 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore Q8KAY0 Go to UniProtKB: Q8KAY0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8KAY0
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Photosystem P840 reaction center iron-sulfur protein	B	231	Chlorobaculum tepidum TLS	Mutation(s): 0
UniProt
Find proteins for Q8KAY1 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore Q8KAY1 Go to UniProtKB: Q8KAY1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8KAY1
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c	C, L [auth c]	206	Chlorobaculum tepidum TLS	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for O07091 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore O07091 Go to UniProtKB: O07091
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O07091
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
P840 reaction center 17 kDa protein	D	143	Chlorobaculum tepidum TLS	Mutation(s): 0
UniProt
Find proteins for Q8KEP5 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore Q8KEP5 Go to UniProtKB: Q8KEP5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8KEP5
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacteriochlorophyll a protein	E, F, G, H, I E, F, G, H, I, J	366	Chlorobaculum tepidum TLS	Mutation(s): 0
UniProt
Find proteins for Q46393 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore Q46393 Go to UniProtKB: Q46393
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q46393
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 8 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
BCL (Subject of Investigation/LOI) Query on BCL Download:Ideal Coordinates CCD File SDF format, chain AA [auth A] SDF format, chain AB [auth F] SDF format, chain AC [auth J] SDF format, chain BB [auth G] SDF format, chain BC [auth J] SDF format, chain CB [auth G] SDF format, chain CC [auth J] SDF format, chain DB [auth G] SDF format, chain DC [auth J] SDF format, chain EB [auth G] SDF format, chain EC [auth J] SDF format, chain FB [auth G] SDF format, chain GB [auth G] SDF format, chain HB [auth H] SDF format, chain JA [auth E] SDF format, chain JB [auth H] SDF format, chain JC [auth a] SDF format, chain KA [auth E] SDF format, chain KB [auth H] SDF format, chain KC [auth a] SDF format, chain LA [auth E] SDF format, chain LB [auth H] SDF format, chain LC [auth a] SDF format, chain MA [auth E] SDF format, chain MB [auth H] SDF format, chain NB [auth H] SDF format, chain OA [auth E] SDF format, chain OB [auth H] SDF format, chain OC [auth a] SDF format, chain P [auth A] SDF format, chain PA [auth E] SDF format, chain Q [auth A] SDF format, chain QA [auth E] SDF format, chain QC [auth a] SDF format, chain R [auth A] SDF format, chain RA [auth E] SDF format, chain RB [auth I] SDF format, chain RC [auth a] SDF format, chain S [auth A] SDF format, chain SA [auth F] SDF format, chain SB [auth I] SDF format, chain SC [auth a] SDF format, chain T [auth A] SDF format, chain TA [auth F] SDF format, chain TB [auth I] SDF format, chain TC [auth a] SDF format, chain U [auth A] SDF format, chain UA [auth F] SDF format, chain V [auth A] SDF format, chain VA [auth F] SDF format, chain VB [auth I] SDF format, chain W [auth A] SDF format, chain WA [auth F] SDF format, chain WB [auth I] SDF format, chain X [auth A] SDF format, chain XA [auth F] SDF format, chain Y [auth A] SDF format, chain YA [auth F] SDF format, chain Z [auth A] SDF format, chain ZA [auth F] SDF format, chain ZB [auth J] SDF format, chain YB [auth J] SDF format, chain XB [auth I] SDF format, chain UB [auth I] SDF format, chain QB [auth I] SDF format, chain PC [auth a] SDF format, chain PB [auth I] SDF format, chain NC [auth a] SDF format, chain NA [auth E] SDF format, chain MC [auth a] SDF format, chain IC [auth a] SDF format, chain IB [auth H] MOL2 format, chain AA [auth A] MOL2 format, chain AB [auth F] MOL2 format, chain AC [auth J] MOL2 format, chain BB [auth G] MOL2 format, chain BC [auth J] MOL2 format, chain CB [auth G] MOL2 format, chain CC [auth J] MOL2 format, chain DB [auth G] MOL2 format, chain DC [auth J] MOL2 format, chain EB [auth G] MOL2 format, chain EC [auth J] MOL2 format, chain FB [auth G] MOL2 format, chain GB [auth G] MOL2 format, chain HB [auth H] MOL2 format, chain JA [auth E] MOL2 format, chain JB [auth H] MOL2 format, chain JC [auth a] MOL2 format, chain KA [auth E] MOL2 format, chain KB [auth H] MOL2 format, chain KC [auth a] MOL2 format, chain LA [auth E] MOL2 format, chain LB [auth H] MOL2 format, chain LC [auth a] MOL2 format, chain MA [auth E] MOL2 format, chain MB [auth H] MOL2 format, chain NB [auth H] MOL2 format, chain OA [auth E] MOL2 format, chain OB [auth H] MOL2 format, chain OC [auth a] MOL2 format, chain P [auth A] MOL2 format, chain PA [auth E] MOL2 format, chain Q [auth A] MOL2 format, chain QA [auth E] MOL2 format, chain QC [auth a] MOL2 format, chain R [auth A] MOL2 format, chain RA [auth E] MOL2 format, chain RB [auth I] MOL2 format, chain RC [auth a] MOL2 format, chain S [auth A] MOL2 format, chain SA [auth F] MOL2 format, chain SB [auth I] MOL2 format, chain SC [auth a] MOL2 format, chain T [auth A] MOL2 format, chain TA [auth F] MOL2 format, chain TB [auth I] MOL2 format, chain TC [auth a] MOL2 format, chain U [auth A] MOL2 format, chain UA [auth F] MOL2 format, chain V [auth A] MOL2 format, chain VA [auth F] MOL2 format, chain VB [auth I] MOL2 format, chain W [auth A] MOL2 format, chain WA [auth F] MOL2 format, chain WB [auth I] MOL2 format, chain X [auth A] MOL2 format, chain XA [auth F] MOL2 format, chain Y [auth A] MOL2 format, chain YA [auth F] MOL2 format, chain Z [auth A] MOL2 format, chain ZA [auth F] MOL2 format, chain ZB [auth J] MOL2 format, chain YB [auth J] MOL2 format, chain XB [auth I] MOL2 format, chain UB [auth I] MOL2 format, chain QB [auth I] MOL2 format, chain PC [auth a] MOL2 format, chain PB [auth I] MOL2 format, chain NC [auth a] MOL2 format, chain NA [auth E] MOL2 format, chain MC [auth a] MOL2 format, chain IC [auth a] MOL2 format, chain IB [auth H] mmCIF format, chain AA [auth A] mmCIF format, chain AB [auth F] mmCIF format, chain AC [auth J] mmCIF format, chain BB [auth G] mmCIF format, chain BC [auth J] mmCIF format, chain CB [auth G] mmCIF format, chain CC [auth J] mmCIF format, chain DB [auth G] mmCIF format, chain DC [auth J] mmCIF format, chain EB [auth G] mmCIF format, chain EC [auth J] mmCIF format, chain FB [auth G] mmCIF format, chain GB [auth G] mmCIF format, chain HB [auth H] mmCIF format, chain JA [auth E] mmCIF format, chain JB [auth H] mmCIF format, chain JC [auth a] mmCIF format, chain KA [auth E] mmCIF format, chain KB [auth H] mmCIF format, chain KC [auth a] mmCIF format, chain LA [auth E] mmCIF format, chain LB [auth H] mmCIF format, chain LC [auth a] mmCIF format, chain MA [auth E] mmCIF format, chain MB [auth H] mmCIF format, chain NB [auth H] mmCIF format, chain OA [auth E] mmCIF format, chain OB [auth H] mmCIF format, chain OC [auth a] mmCIF format, chain P [auth A] mmCIF format, chain PA [auth E] mmCIF format, chain Q [auth A] mmCIF format, chain QA [auth E] mmCIF format, chain QC [auth a] mmCIF format, chain R [auth A] mmCIF format, chain RA [auth E] mmCIF format, chain RB [auth I] mmCIF format, chain RC [auth a] mmCIF format, chain S [auth A] mmCIF format, chain SA [auth F] mmCIF format, chain SB [auth I] mmCIF format, chain SC [auth a] mmCIF format, chain T [auth A] mmCIF format, chain TA [auth F] mmCIF format, chain TB [auth I] mmCIF format, chain TC [auth a] mmCIF format, chain U [auth A] mmCIF format, chain UA [auth F] mmCIF format, chain V [auth A] mmCIF format, chain VA [auth F] mmCIF format, chain VB [auth I] mmCIF format, chain W [auth A] mmCIF format, chain WA [auth F] mmCIF format, chain WB [auth I] mmCIF format, chain X [auth A] mmCIF format, chain XA [auth F] mmCIF format, chain Y [auth A] mmCIF format, chain YA [auth F] mmCIF format, chain Z [auth A] mmCIF format, chain ZA [auth F] mmCIF format, chain ZB [auth J] mmCIF format, chain YB [auth J] mmCIF format, chain XB [auth I] mmCIF format, chain UB [auth I] mmCIF format, chain QB [auth I] mmCIF format, chain PC [auth a] mmCIF format, chain PB [auth I] mmCIF format, chain NC [auth a] mmCIF format, chain NA [auth E] mmCIF format, chain MC [auth a] mmCIF format, chain IC [auth a] mmCIF format, chain IB [auth H]	AA [auth A] AB [auth F] AC [auth J] BB [auth G] BC [auth J] AA [auth A], AB [auth F], AC [auth J], BB [auth G], BC [auth J], CB [auth G], CC [auth J], DB [auth G], DC [auth J], EB [auth G], EC [auth J], FB [auth G], GB [auth G], HB [auth H], IB [auth H], IC [auth a], JA [auth E], JB [auth H], JC [auth a], KA [auth E], KB [auth H], KC [auth a], LA [auth E], LB [auth H], LC [auth a], MA [auth E], MB [auth H], MC [auth a], NA [auth E], NB [auth H], NC [auth a], OA [auth E], OB [auth H], OC [auth a], P [auth A], PA [auth E], PB [auth I], PC [auth a], Q [auth A], QA [auth E], QB [auth I], QC [auth a], R [auth A], RA [auth E], RB [auth I], RC [auth a], S [auth A], SA [auth F], SB [auth I], SC [auth a], T [auth A], TA [auth F], TB [auth I], TC [auth a], U [auth A], UA [auth F], UB [auth I], V [auth A], VA [auth F], VB [auth I], W [auth A], WA [auth F], WB [auth I], X [auth A], XA [auth F], XB [auth I], Y [auth A], YA [auth F], YB [auth J], Z [auth A], ZA [auth F], ZB [auth J]	BACTERIOCHLOROPHYLL A C₅₅ H₇₄ Mg N₄ O₆ DSJXIQQMORJERS-AGGZHOMASA-M		Interactions Focus chain AA [auth A] Focus chain AB [auth F] Focus chain AC [auth J] Focus chain BB [auth G] Focus chain BC [auth J] Focus chain CB [auth G] Focus chain CC [auth J] Focus chain DB [auth G] Focus chain DC [auth J] Focus chain EB [auth G] Focus chain EC [auth J] Focus chain FB [auth G] Focus chain GB [auth G] Focus chain HB [auth H] Focus chain IB [auth H] Focus chain IC [auth a] Focus chain JA [auth E] Focus chain JB [auth H] Focus chain JC [auth a] Focus chain KA [auth E] Focus chain KB [auth H] Focus chain KC [auth a] Focus chain LA [auth E] Focus chain LB [auth H] Focus chain LC [auth a] Focus chain MA [auth E] Focus chain MB [auth H] Focus chain MC [auth a] Focus chain NA [auth E] Focus chain NB [auth H] Focus chain NC [auth a] Focus chain OA [auth E] Focus chain OB [auth H] Focus chain OC [auth a] Focus chain P [auth A] Focus chain PA [auth E] Focus chain PB [auth I] Focus chain PC [auth a] Focus chain Q [auth A] Focus chain QA [auth E] Focus chain QB [auth I] Focus chain QC [auth a] Focus chain R [auth A] Focus chain RA [auth E] Focus chain RB [auth I] Focus chain RC [auth a] Focus chain S [auth A] Focus chain SA [auth F] Focus chain SB [auth I] Focus chain SC [auth a] Focus chain T [auth A] Focus chain TA [auth F] Focus chain TB [auth I] Focus chain TC [auth a] Focus chain U [auth A] Focus chain UA [auth F] Focus chain UB [auth I] Focus chain V [auth A] Focus chain VA [auth F] Focus chain VB [auth I] Focus chain W [auth A] Focus chain WA [auth F] Focus chain WB [auth I] Focus chain X [auth A] Focus chain XA [auth F] Focus chain XB [auth I] Focus chain Y [auth A] Focus chain YA [auth F] Focus chain YB [auth J] Focus chain Z [auth A] Focus chain ZA [auth F] Focus chain ZB [auth J] Interactions & Density Focus chain AA [auth A] Focus chain AB [auth F] Focus chain AC [auth J] Focus chain BB [auth G] Focus chain BC [auth J] Focus chain CB [auth G] Focus chain CC [auth J] Focus chain DB [auth G] Focus chain DC [auth J] Focus chain EB [auth G] Focus chain EC [auth J] Focus chain FB [auth G] Focus chain GB [auth G] Focus chain HB [auth H] Focus chain IB [auth H] Focus chain IC [auth a] Focus chain JA [auth E] Focus chain JB [auth H] Focus chain JC [auth a] Focus chain KA [auth E] Focus chain KB [auth H] Focus chain KC [auth a] Focus chain LA [auth E] Focus chain LB [auth H] Focus chain LC [auth a] Focus chain MA [auth E] Focus chain MB [auth H] Focus chain MC [auth a] Focus chain NA [auth E] Focus chain NB [auth H] Focus chain NC [auth a] Focus chain OA [auth E] Focus chain OB [auth H] Focus chain OC [auth a] Focus chain P [auth A] Focus chain PA [auth E] Focus chain PB [auth I] Focus chain PC [auth a] Focus chain Q [auth A] Focus chain QA [auth E] Focus chain QB [auth I] Focus chain QC [auth a] Focus chain R [auth A] Focus chain RA [auth E] Focus chain RB [auth I] Focus chain RC [auth a] Focus chain S [auth A] Focus chain SA [auth F] Focus chain SB [auth I] Focus chain SC [auth a] Focus chain T [auth A] Focus chain TA [auth F] Focus chain TB [auth I] Focus chain TC [auth a] Focus chain U [auth A] Focus chain UA [auth F] Focus chain UB [auth I] Focus chain V [auth A] Focus chain VA [auth F] Focus chain VB [auth I] Focus chain W [auth A] Focus chain WA [auth F] Focus chain WB [auth I] Focus chain X [auth A] Focus chain XA [auth F] Focus chain XB [auth I] Focus chain Y [auth A] Focus chain YA [auth F] Focus chain YB [auth J] Focus chain Z [auth A] Focus chain ZA [auth F] Focus chain ZB [auth J]
GS0 (Subject of Investigation/LOI) Query on GS0 Download:Ideal Coordinates CCD File SDF format, chain FC [auth a] SDF format, chain M [auth A] MOL2 format, chain FC [auth a] MOL2 format, chain M [auth A] mmCIF format, chain FC [auth a] mmCIF format, chain M [auth A]	FC [auth a], M [auth A]	Bacteriochlorophyll A isomer C₅₅ H₇₄ Mg N₄ O₆ DSJXIQQMORJERS-NDWDOOJPSA-M		Interactions Focus chain FC [auth a] Focus chain M [auth A] Interactions & Density Focus chain FC [auth a] Focus chain M [auth A]
F39 (Subject of Investigation/LOI) Query on F39 Download:Ideal Coordinates CCD File SDF format, chain BA [auth A] SDF format, chain UC [auth a] MOL2 format, chain BA [auth A] MOL2 format, chain UC [auth a] mmCIF format, chain BA [auth A] mmCIF format, chain UC [auth a]	BA [auth A], UC [auth a]	[(2R,3S,4S,5R,6R)-6-[(10E,12E,14E)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate C₅₈ H₈₆ O₇ NXEFUAFHBLRHFO-DDUHONCASA-N		Interactions Focus chain BA [auth A] Focus chain UC [auth a] Interactions & Density Focus chain BA [auth A] Focus chain UC [auth a]
CLA (Subject of Investigation/LOI) Query on CLA Download:Ideal Coordinates CCD File SDF format, chain GC [auth a] SDF format, chain HC [auth a] SDF format, chain N [auth A] SDF format, chain O [auth A] MOL2 format, chain GC [auth a] MOL2 format, chain HC [auth a] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] mmCIF format, chain GC [auth a] mmCIF format, chain HC [auth a] mmCIF format, chain N [auth A] mmCIF format, chain O [auth A]	GC [auth a], HC [auth a], N [auth A], O [auth A]	CHLOROPHYLL A C₅₅ H₇₂ Mg N₄ O₅ ATNHDLDRLWWWCB-AENOIHSZSA-M		Interactions Focus chain GC [auth a] Focus chain HC [auth a] Focus chain N [auth A] Focus chain O [auth A] Interactions & Density Focus chain GC [auth a] Focus chain HC [auth a] Focus chain N [auth A] Focus chain O [auth A]
IKV (Subject of Investigation/LOI) Query on IKV Download:Ideal Coordinates CCD File SDF format, chain EA [auth A] SDF format, chain XC [auth a] MOL2 format, chain EA [auth A] MOL2 format, chain XC [auth a] mmCIF format, chain EA [auth A] mmCIF format, chain XC [auth a]	EA [auth A], XC [auth a]	[(2~{R})-2-hexadecanoyloxy-3-[(2~{S},3~{S},4~{R},5~{R},6~{S})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-propyl] hexadecanoate C₄₁ H₇₈ O₁₀ DFUALJIUMYYHRG-DWBMWBIPSA-N		Interactions Focus chain EA [auth A] Focus chain XC [auth a] Interactions & Density Focus chain EA [auth A] Focus chain XC [auth a]
LHG (Subject of Investigation/LOI) Query on LHG Download:Ideal Coordinates CCD File SDF format, chain CA [auth A] SDF format, chain DA [auth A] SDF format, chain VC [auth a] SDF format, chain WC [auth a] MOL2 format, chain CA [auth A] MOL2 format, chain DA [auth A] MOL2 format, chain VC [auth a] MOL2 format, chain WC [auth a] mmCIF format, chain CA [auth A] mmCIF format, chain DA [auth A] mmCIF format, chain VC [auth a] mmCIF format, chain WC [auth a]	CA [auth A], DA [auth A], VC [auth a], WC [auth a]	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C₃₈ H₇₅ O₁₀ P BIABMEZBCHDPBV-MPQUPPDSSA-N		Interactions Focus chain CA [auth A] Focus chain DA [auth A] Focus chain VC [auth a] Focus chain WC [auth a] Interactions & Density Focus chain CA [auth A] Focus chain DA [auth A] Focus chain VC [auth a] Focus chain WC [auth a]
SF4 (Subject of Investigation/LOI) Query on SF4 Download:Ideal Coordinates CCD File SDF format, chain GA [auth A] SDF format, chain HA [auth B] SDF format, chain IA [auth B] MOL2 format, chain GA [auth A] MOL2 format, chain HA [auth B] MOL2 format, chain IA [auth B] mmCIF format, chain GA [auth A] mmCIF format, chain HA [auth B] mmCIF format, chain IA [auth B]	GA [auth A], HA [auth B], IA [auth B]	IRON/SULFUR CLUSTER Fe₄ S₄ LJBDFODJNLIPKO-UHFFFAOYSA-N		Interactions Focus chain GA [auth A] Focus chain HA [auth B] Focus chain IA [auth B] Interactions & Density Focus chain GA [auth A] Focus chain HA [auth B] Focus chain IA [auth B]
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain FA [auth A] SDF format, chain YC [auth a] MOL2 format, chain FA [auth A] MOL2 format, chain YC [auth a] mmCIF format, chain FA [auth A] mmCIF format, chain YC [auth a]	FA [auth A], YC [auth a]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain FA [auth A] Focus chain YC [auth a] Interactions & Density Focus chain FA [auth A] Focus chain YC [auth a]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.18.2
MODEL REFINEMENT	Coot	0.8.9.2

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-02-08

Deposition Author(s):

Xie, H.

Tsiotis, G.

Funding Organization	Location	Grant Number
Max Planck Society	Germany	--

Revision History (Full details and data files)

Version 1.0: 2023-02-08
Type: Initial release
Version 1.1: 2025-10-01
Changes: Advisory, Data collection, Derived calculations, Refinement description, Structure summary