7YNL

EB-bound alpha-synuclein fibrils

PDB DOI: https://doi.org/10.2210/pdb7YNL/pdb
EM Map EMD-33965: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-07-31 Released: 2023-08-02
Deposition Author(s): Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.60 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

EB-bound alpha-synuclein fibrils

Tao, Y.Q., Zhao, Q.Y., Liu, C., Li, D.

To be published.

Macromolecule Content

Total Structure Weight: 129.77 kDa
Atom Count: 4,080
Modelled Residue Count: 464
Deposited Residue Count: 1,120
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A [auth E] B [auth F] C [auth G] D [auth A] E [auth H] A [auth E], B [auth F], C [auth G], D [auth A], E [auth H], F [auth B], G [auth C], H [auth D]	140	Homo sapiens	Mutation(s): 0 Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840
PHAROS: P37840 GTEx: ENSG00000145335
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P37840
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IZ8 (Subject of Investigation/LOI) Query on IZ8 Download Ideal Coordinates CCD File SDF format, chain I [auth E] SDF format, chain J [auth E] SDF format, chain K [auth F] SDF format, chain L [auth F] SDF format, chain M [auth F] SDF format, chain N [auth G] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain Q [auth H] SDF format, chain R [auth H] SDF format, chain S [auth B] SDF format, chain T [auth B] SDF format, chain U [auth B] SDF format, chain V [auth B] SDF format, chain W [auth C] SDF format, chain X [auth D] MOL2 format, chain I [auth E] MOL2 format, chain J [auth E] MOL2 format, chain K [auth F] MOL2 format, chain L [auth F] MOL2 format, chain M [auth F] MOL2 format, chain N [auth G] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth H] MOL2 format, chain R [auth H] MOL2 format, chain S [auth B] MOL2 format, chain T [auth B] MOL2 format, chain U [auth B] MOL2 format, chain V [auth B] MOL2 format, chain W [auth C] MOL2 format, chain X [auth D] mmCIF format, chain I [auth E] mmCIF format, chain J [auth E] mmCIF format, chain K [auth F] mmCIF format, chain L [auth F] mmCIF format, chain M [auth F] mmCIF format, chain N [auth G] mmCIF format, chain O [auth A] mmCIF format, chain P [auth A] mmCIF format, chain Q [auth H] mmCIF format, chain R [auth H] mmCIF format, chain S [auth B] mmCIF format, chain T [auth B] mmCIF format, chain U [auth B] mmCIF format, chain V [auth B] mmCIF format, chain W [auth C] mmCIF format, chain X [auth D]	I [auth E] J [auth E] K [auth F] L [auth F] M [auth F] I [auth E], J [auth E], K [auth F], L [auth F], M [auth F], N [auth G], O [auth A], P [auth A], Q [auth H], R [auth H], S [auth B], T [auth B], U [auth B], V [auth B], W [auth C], X [auth D]	4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid C₃₄ H₂₈ N₆ O₁₄ S₄ COXVTLYNGOIATD-HVMBLDELSA-N		Interactions Focus chain I [auth E] Focus chain J [auth E] Focus chain K [auth F] Focus chain L [auth F] Focus chain M [auth F] Focus chain N [auth G] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth H] Focus chain R [auth H] Focus chain S [auth B] Focus chain T [auth B] Focus chain U [auth B] Focus chain V [auth B] Focus chain W [auth C] Focus chain X [auth D] Interactions & Density Focus chain I [auth E] Focus chain J [auth E] Focus chain K [auth F] Focus chain L [auth F] Focus chain M [auth F] Focus chain N [auth G] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth H] Focus chain R [auth H] Focus chain S [auth B] Focus chain T [auth B] Focus chain U [auth B] Focus chain V [auth B] Focus chain W [auth C] Focus chain X [auth D]