Cryo-EM Structure of the 50S-HflX Complex Reveals a Novel Mechanism of Antibiotic Resistance in E. coli
Wu, D., Dai, Y., Gao, N.(2022) bioRxiv 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
GTPase HflX | A [auth 6] | 426 | Escherichia coli | Mutation(s): 0  Gene Names: hflX, b4173, JW4131 | |
UniProt | |||||
Find proteins for P25519 (Escherichia coli (strain K12)) Explore P25519  Go to UniProtKB:  P25519 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P25519 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L2 | D [auth K] | 271 | Escherichia coli | Mutation(s): 0  Gene Names: rplB, EAZG_04115 | |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L3 | E [auth L] | 209 | Escherichia coli | Mutation(s): 0  Gene Names:  rplC, rplC_1, A5U30_004554, A6592_25805, A8499_003334, A8502_004021, A9X72_02175, AAG43_004444, AAS29_002160, ACN68_01905... | |
UniProt | |||||
Find proteins for C3SQU2 (Escherichia coli) Explore C3SQU2  Go to UniProtKB:  C3SQU2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SQU2 | ||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L4 | F [auth M] | 201 | Escherichia coli | Mutation(s): 0  Gene Names: rplD, eryA, b3319, JW3281 | |
UniProt | |||||
Find proteins for P60723 (Escherichia coli (strain K12)) Explore P60723  Go to UniProtKB:  P60723 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P60723 | ||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L5 | G [auth N] | 177 | Escherichia coli | Mutation(s): 0  Gene Names: rplE, b3308, JW3270 | |
UniProt | |||||
Find proteins for P62399 (Escherichia coli (strain K12)) Explore P62399  Go to UniProtKB:  P62399 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62399 | ||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L6 | H [auth O] | 176 | Escherichia coli | Mutation(s): 0  Gene Names: rplF | |
UniProt | |||||
Find proteins for C3SR17 (Escherichia coli) Explore C3SR17  Go to UniProtKB:  C3SR17 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SR17 | ||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L9 | I [auth P] | 149 | Escherichia coli | Mutation(s): 0  Gene Names: rplI, b4203, JW4161 | |
UniProt | |||||
Find proteins for P0A7R1 (Escherichia coli (strain K12)) Explore P0A7R1  Go to UniProtKB:  P0A7R1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7R1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L11 | J [auth Q] | 134 | Escherichia coli | Mutation(s): 0  Gene Names: rplK, relC, b3983, JW3946 | |
UniProt | |||||
Find proteins for P0A7J7 (Escherichia coli (strain K12)) Explore P0A7J7  Go to UniProtKB:  P0A7J7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7J7 | ||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L13 | K [auth R] | 142 | Escherichia coli | Mutation(s): 0  Gene Names: rplM, b3231, JW3200 | |
UniProt | |||||
Find proteins for P0AA10 (Escherichia coli (strain K12)) Explore P0AA10  Go to UniProtKB:  P0AA10 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AA10 | ||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L14 | L [auth S] | 122 | Escherichia coli | Mutation(s): 0  Gene Names: rplN | |
UniProt | |||||
Find proteins for C3SQZ2 (Escherichia coli) Explore C3SQZ2  Go to UniProtKB:  C3SQZ2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3SQZ2 | ||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L15 | M [auth T] | 144 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: rplO | |
UniProt | |||||
Find proteins for P02413 (Escherichia coli (strain K12)) Explore P02413  Go to UniProtKB:  P02413 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02413 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L16 | N [auth U] | 136 | Escherichia coli | Mutation(s): 0  Gene Names: rplP, b3313, JW3275 | |
UniProt | |||||
Find proteins for P0ADY7 (Escherichia coli (strain K12)) Explore P0ADY7  Go to UniProtKB:  P0ADY7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ADY7 | ||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L17 | O [auth V] | 120 | Escherichia coli | Mutation(s): 0  Gene Names: rplQ, EAXG_02993 | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L18 | P [auth W] | 116 | Escherichia coli | Mutation(s): 0  Gene Names: rplR, b3304, JW3266 | |
UniProt | |||||
Find proteins for P0C018 (Escherichia coli (strain K12)) Explore P0C018  Go to UniProtKB:  P0C018 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0C018 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L19 | Q [auth X] | 114 | Escherichia coli | Mutation(s): 0  Gene Names: rplS, b2606, JW2587 | |
UniProt | |||||
Find proteins for P0A7K6 (Escherichia coli (strain K12)) Explore P0A7K6  Go to UniProtKB:  P0A7K6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7K6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L20 | R [auth Y] | 117 | Escherichia coli | Mutation(s): 0  Gene Names: rplT, pdzA, b1716, JW1706 | |
UniProt | |||||
Find proteins for P0A7L3 (Escherichia coli (strain K12)) Explore P0A7L3  Go to UniProtKB:  P0A7L3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7L3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L21 | S [auth Z] | 103 | Escherichia coli | Mutation(s): 0  Gene Names: rplU, b3186, JW3153 | |
UniProt | |||||
Find proteins for P0AG48 (Escherichia coli (strain K12)) Explore P0AG48  Go to UniProtKB:  P0AG48 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG48 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L22 | T [auth a] | 110 | Escherichia coli | Mutation(s): 0  Gene Names: rplV, eryB, b3315, JW3277 | |
UniProt | |||||
Find proteins for P61175 (Escherichia coli (strain K12)) Explore P61175  Go to UniProtKB:  P61175 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61175 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L23 | U [auth b] | 93 | Escherichia coli | Mutation(s): 0  Gene Names: rplW, b3318, JW3280 | |
UniProt | |||||
Find proteins for P0ADZ0 (Escherichia coli (strain K12)) Explore P0ADZ0  Go to UniProtKB:  P0ADZ0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0ADZ0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L24 | V [auth c] | 102 | Escherichia coli | Mutation(s): 0  Gene Names: rplX, ECJG_02968 | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L25 | W [auth d] | 94 | Escherichia coli | Mutation(s): 0  Gene Names: rplY, b2185, JW2173 | |
UniProt | |||||
Find proteins for P68919 (Escherichia coli (strain K12)) Explore P68919  Go to UniProtKB:  P68919 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68919 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L27 | X [auth e] | 75 | Escherichia coli | Mutation(s): 0  Gene Names: rpmA, b3185, JW3152 | |
UniProt | |||||
Find proteins for P0A7L8 (Escherichia coli (strain K12)) Explore P0A7L8  Go to UniProtKB:  P0A7L8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7L8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L28 | Y [auth f] | 77 | Escherichia coli | Mutation(s): 0  Gene Names: rpmB, b3637, JW3612 | |
UniProt | |||||
Find proteins for P0A7M2 (Escherichia coli (strain K12)) Explore P0A7M2  Go to UniProtKB:  P0A7M2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7M2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L29 | Z [auth g] | 62 | Escherichia coli | Mutation(s): 0  Gene Names: rpmC, b3312, JW3274 | |
UniProt | |||||
Find proteins for P0A7M6 (Escherichia coli (strain K12)) Explore P0A7M6  Go to UniProtKB:  P0A7M6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7M6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L30 | AA [auth h] | 58 | Escherichia coli | Mutation(s): 0  Gene Names: rpmD, b3302, JW3264 | |
UniProt | |||||
Find proteins for P0AG51 (Escherichia coli (strain K12)) Explore P0AG51  Go to UniProtKB:  P0AG51 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AG51 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L32 | BA [auth i] | 56 | Escherichia coli | Mutation(s): 0  Gene Names: rpmF, HMPREF9536_00655 | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 29 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L33 | CA [auth j] | 50 | Escherichia coli | Mutation(s): 0  Gene Names: rpmG, b3636, JW3611 | |
UniProt | |||||
Find proteins for P0A7N9 (Escherichia coli (strain K12)) Explore P0A7N9  Go to UniProtKB:  P0A7N9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7N9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 30 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L34 | DA [auth k] | 46 | Escherichia coli | Mutation(s): 0  Gene Names: rpmH, rimA, ssaF, b3703, JW3680 | |
UniProt | |||||
Find proteins for P0A7P5 (Escherichia coli (strain K12)) Explore P0A7P5  Go to UniProtKB:  P0A7P5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7P5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 31 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L35 | EA [auth l] | 64 | Escherichia coli | Mutation(s): 0  Gene Names: rpmI, b1717, JW1707 | |
UniProt | |||||
Find proteins for P0A7Q1 (Escherichia coli (strain K12)) Explore P0A7Q1  Go to UniProtKB:  P0A7Q1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Q1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 32 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L36 | FA [auth m] | 38 | Escherichia coli | Mutation(s): 0  Gene Names: rpmJ, b3299, JW3261 | |
UniProt | |||||
Find proteins for P0A7Q6 (Escherichia coli (strain K12)) Explore P0A7Q6  Go to UniProtKB:  P0A7Q6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Q6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome | B [auth I] | 2,904 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5S rRNA | C [auth J] | 118 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GNP (Subject of Investigation/LOI) Query on GNP | GA [auth 6] | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H17 N6 O13 P3 UQABYHGXWYXDTK-UUOKFMHZSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | LA [auth m] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG (Subject of Investigation/LOI) Query on MG | HA [auth 6], IA [auth K], KA [auth L] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA (Subject of Investigation/LOI) Query on NA | JA [auth K] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
National Science Foundation (NSF, China) | China | 31725007 |