7YEQ

Structural insight into African Swine Fever Virus CP312R protein reveals it as a single-stranded DNA binding protein

PDB DOI: https://doi.org/10.2210/pdb7YEQ/pdb

Classification: VIRUS
Organism(s): African swine fever virus
Expression System: Escherichia phage EcSzw-2
Mutation(s): No

Deposited: 2022-07-06 Released: 2023-07-26
Deposition Author(s): Chen, L.F., Wu, Y.K.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.32 Å
R-Value Free: 0.258
R-Value Work: 0.214
R-Value Observed: 0.218

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insight into African Swine Fever Virus CP312R protein reveals it as a single-stranded DNA binding protein

Chen, L.F., Wu, Y.K.

To be published.

Macromolecule Content

Total Structure Weight: 34.53 kDa
Atom Count: 2,219
Modelled Residue Count: 274
Deposited Residue Count: 307
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CP312R	A	307	African swine fever virus	Mutation(s): 0 Gene Names: CP312R CDS, ASFV-Georgia_4-120, CP312R
UniProt
Find proteins for A0A2X0RVH4 (African swine fever virus) Explore A0A2X0RVH4 Go to UniProtKB: A0A2X0RVH4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2X0RVH4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.32 Å
R-Value Free: 0.258
R-Value Work: 0.214
R-Value Observed: 0.218
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.172	α = 90
b = 66.608	β = 90
c = 115.099	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-07-26

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	National Natural Science Foundation of China (32002049)

Revision History (Full details and data files)

Version 1.0: 2023-07-26
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.