7XOJ

Cryo-EM structure of GroEL bound to unfolded substrate (UGT1A) at 2.8 Ang. resolution (Consensus Refinement)

  • Classification: CHAPERONE
  • Organism(s): Escherichia coli
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2022-05-01 Released: 2023-05-03 
  • Deposition Author(s): Stapleton, K., Takagi, J., Mizohata, E.
  • Funding Organization(s): Japan Agency for Medical Research and Development (AMED), Japan Society for the Promotion of Science (JSPS), Japan Science and Technology, Ministry of Education, Culture, Sports, Science and Technology (Japan), New Energy and Industrial Technology Development Organization (NEDO)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM

Stapleton, K.M.Mizobata, T.Miyazaki, N.Takatsuji, T.Kato, T.Iwasaki, K.Standley, D.M.Kawamura, T.Nakane, T.Takagi, J.Mizohata, E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chaperonin GroEL
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N
547Escherichia coliMutation(s): 0 
Gene Names: groELgroLmopAb4143JW4103
EC: 5.6.1.7
UniProt
Find proteins for P0A6F5 (Escherichia coli (strain K12))
Explore P0A6F5 
Go to UniProtKB:  P0A6F5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A6F5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.19.2-4158

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Agency for Medical Research and Development (AMED)Japan21am0101075
Japan Agency for Medical Research and Development (AMED)Japan22ama121025j0001
Japan Agency for Medical Research and Development (AMED)JapanJP21am0101066
Japan Society for the Promotion of Science (JSPS)JapanJP19K06513
Japan Science and TechnologyJapanJPMJPR17GB
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan19H05780
New Energy and Industrial Technology Development Organization (NEDO)JapanJPNP18016

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-03
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection