7XNY

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia.

Zhou, F.Aroua, N.Liu, Y.Rohde, C.Cheng, J.Wirth, A.K.Fijalkowska, D.Gollner, S.Lotze, M.Yun, H.Yu, X.Pabst, C.Sauer, T.Oellerich, T.Serve, H.Rollig, C.Bornhauser, M.Thiede, C.Baldus, C.Frye, M.Raffel, S.Krijgsveld, J.Jeremias, I.Beckmann, R.Trumpp, A.Muller-Tidow, C.

(2023) Cancer Discov 13: 332-347

  • DOI: https://doi.org/10.1158/2159-8290.CD-22-0210
  • Primary Citation of Related Structures:  
    7XNX, 7XNY

  • PubMed Abstract: 

    The development and regulation of malignant self-renewal remain unresolved issues. Here, we provide biochemical, genetic, and functional evidence that dynamics in ribosomal RNA (rRNA) 2'-O-methylation regulate leukemia stem cell (LSC) activity in vivo. A comprehensive analysis of the rRNA 2'-O-methylation landscape of 94 patients with acute myeloid leukemia (AML) revealed dynamic 2'-O-methylation specifically at exterior sites of ribosomes. The rRNA 2'-O-methylation pattern is closely associated with AML development stage and LSC gene expression signature. Forced expression of the 2'-O-methyltransferase fibrillarin (FBL) induced an AML stem cell phenotype and enabled engraftment of non-LSC leukemia cells in NSG mice. Enhanced 2'-O-methylation redirected the ribosome translation program toward amino acid transporter mRNAs enriched in optimal codons and subsequently increased intracellular amino acid levels. Methylation at the single site 18S-guanosine 1447 was instrumental for LSC activity. Collectively, our work demonstrates that dynamic 2'-O-methylation at specific sites on rRNAs shifts translational preferences and controls AML LSC self-renewal. We establish the complete rRNA 2'-O-methylation landscape in human AML. Plasticity of rRNA 2'-O-methylation shifts protein translation toward an LSC phenotype. This dynamic process constitutes a novel concept of how cancers reprogram cell fate and function. This article is highlighted in the In This Issue feature, p. 247.


  • Organizational Affiliation

    Department of Internal Medicine V, Heidelberg University Hospital, Heidelberg, Germany.


Macromolecules

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8D [auth LA]257Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161016 
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UniProt GroupP62917
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3E [auth LB]403Homo sapiensMutation(s): 0 
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PHAROS:  P39023
GTEx:  ENSG00000100316 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4F [auth LC]427Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174444 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5G [auth LD]297Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000122406 
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UniProt GroupP46777
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6H [auth LE]288Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000089009 
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UniProt GroupQ02878
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7I [auth LF]248Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000147604 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aJ [auth LG]266Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000148303 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9K [auth LH]192Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000163682 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L10 isoform AL [auth LI]214Homo sapiensMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11M [auth LJ]178Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142676 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13N [auth LL]211Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000167526 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14O [auth LM]215Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000188846 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L15P [auth LN]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174748 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13aQ [auth LO]203Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142541 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17R [auth LP]184Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000265681 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18S [auth LQ]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000063177 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19T [auth LR]196Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108298 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aU [auth LS]176Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105640 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21V [auth LT]160Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000122026 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22W [auth LU]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000116251 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23X [auth LV]140Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000125691 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24Y [auth LW]157Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114391 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23aZ [auth LX]156Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198242 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L26AA [auth LY]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000161970 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27BA [auth LZ]135Homo sapiensMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aCA [auth La]148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166441 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29DA [auth Lb]159Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000162244 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30EA [auth Lc]115Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000156482 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31FA [auth Ld]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000071082 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32GA [auth Le]135Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000144713 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35aHA [auth Lf]110Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182899 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34IA [auth Lg]117Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000109475 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35JA [auth Lh]123Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136942 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36KA [auth Li]105Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000130255 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37LA [auth Lj]97Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145592 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38MA [auth Lk]70Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000172809 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39NA [auth Ll]51Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198918 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40OA [auth Lm]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000221983 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41PA [auth Ln]25Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000229117 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36aQA [auth Lo]106Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000241343 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aRA [auth Lp]92Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197756 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28SA [auth Lr]137Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108107 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAUA [auth SA]295Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000168028 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aVA [auth SB]264Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000145425 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3WA [auth SD]243Homo sapiensMutation(s): 0 
EC: 4.2.99.18
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GTEx:  ENSG00000149273 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4, X isoformXA [auth SE]263Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198034 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5YA [auth SF]204Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000083845 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7ZA [auth SH]194Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171863 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8AB [auth SI]208Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142937 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10BB [auth SK]165Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000124614 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11CB [auth SL]158Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000142534 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15DB [auth SP]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000115268 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16EB [auth SQ]146Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105193 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17FB [auth SR]135Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182774 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18GB [auth SS]152Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000231500 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19HB [auth ST]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105372 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20IB [auth SU]119Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000008988 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21JB [auth SV]83Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171858 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23KB [auth SX]143Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000186468 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26LB [auth Sa]115Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197728 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28MB [auth Sc]69Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000233927 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29NB [auth Sd]56Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000213741 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1OB [auth Sg]317Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204628 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2PB [auth SC]293Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000140988 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6QB [auth SG]249Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137154 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9RB [auth SJ]194Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000170889 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12SB [auth SM]132Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112306 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13TB [auth SN]151Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000110700 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14UB [auth SO]151Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000164587 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15aVB [auth SW]130Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000134419 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24WB [auth SY]133Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000138326 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25XB [auth SZ]125Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000118181 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27YB [auth Sb]84Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000177954 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30ZB [auth Se]59Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000149806 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aAC [auth Sf]156Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143947 
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Entity ID: 1
MoleculeChains LengthOrganismImage
28S rRNAA [auth L1]5,070Homo sapiens
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Entity ID: 2
MoleculeChains LengthOrganismImage
5S rRNAB [auth L2]120Homo sapiens
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Entity ID: 3
MoleculeChains LengthOrganismImage
5.8S rRNAC [auth L3]156Homo sapiens
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Entity ID: 46
MoleculeChains LengthOrganismImage
18S rRNATA [auth S2]1,869Homo sapiens
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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AT [auth Sf]
JN [auth Lg]
KN [auth Lj]
LN [auth Lm]
NN [auth Lo]
AT [auth Sf],
JN [auth Lg],
KN [auth Lj],
LN [auth Lm],
NN [auth Lo],
ON [auth Lp],
US [auth Sa],
WS [auth Sd],
ZS [auth Sb]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
K
Query on K

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CM [auth L1]
DM [auth L1]
EM [auth L1]
FM [auth L1]
GM [auth L1]
CM [auth L1],
DM [auth L1],
EM [auth L1],
FM [auth L1],
GM [auth L1],
HM [auth L1],
IM [auth L1],
JM [auth L1],
KM [auth L1],
LM [auth L1],
MM [auth L1],
NM [auth L1]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG

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AD [auth L1]
AE [auth L1]
AF [auth L1]
AG [auth L1]
AH [auth L1]
AD [auth L1],
AE [auth L1],
AF [auth L1],
AG [auth L1],
AH [auth L1],
AI [auth L1],
AJ [auth L1],
AK [auth L1],
AL [auth L1],
AM [auth L1],
AN [auth LC],
AO [auth S2],
AP [auth S2],
AQ [auth S2],
AR [auth S2],
AS [auth S2],
BC [auth L1],
BD [auth L1],
BE [auth L1],
BF [auth L1],
BG [auth L1],
BH [auth L1],
BI [auth L1],
BJ [auth L1],
BK [auth L1],
BL [auth L1],
BM [auth L1],
BN [auth LC],
BO [auth S2],
BP [auth S2],
BQ [auth S2],
BR [auth S2],
BS [auth S2],
CC [auth L1],
CD [auth L1],
CE [auth L1],
CF [auth L1],
CG [auth L1],
CH [auth L1],
CI [auth L1],
CJ [auth L1],
CK [auth L1],
CL [auth L1],
CN [auth LN],
CO [auth S2],
CP [auth S2],
CQ [auth S2],
CR [auth S2],
CS [auth S2],
DC [auth L1],
DD [auth L1],
DE [auth L1],
DF [auth L1],
DG [auth L1],
DH [auth L1],
DI [auth L1],
DJ [auth L1],
DK [auth L1],
DL [auth L1],
DN [auth LP],
DO [auth S2],
DP [auth S2],
DQ [auth S2],
DR [auth S2],
DS [auth S2],
EC [auth L1],
ED [auth L1],
EE [auth L1],
EF [auth L1],
EG [auth L1],
EH [auth L1],
EI [auth L1],
EJ [auth L1],
EK [auth L1],
EL [auth L1],
EN [auth LV],
EO [auth S2],
EP [auth S2],
EQ [auth S2],
ER [auth S2],
ES [auth S2],
FC [auth L1],
FD [auth L1],
FE [auth L1],
FF [auth L1],
FG [auth L1],
FH [auth L1],
FI [auth L1],
FJ [auth L1],
FK [auth L1],
FL [auth L1],
FN [auth Le],
FO [auth S2],
FP [auth S2],
FQ [auth S2],
FR [auth S2],
FS [auth S2],
GC [auth L1],
GD [auth L1],
GE [auth L1],
GF [auth L1],
GG [auth L1],
GH [auth L1],
GI [auth L1],
GJ [auth L1],
GK [auth L1],
GL [auth L1],
GN [auth Le],
GO [auth S2],
GP [auth S2],
GQ [auth S2],
GR [auth S2],
GS [auth S2],
HC [auth L1],
HD [auth L1],
HE [auth L1],
HF [auth L1],
HG [auth L1],
HH [auth L1],
HI [auth L1],
HJ [auth L1],
HK [auth L1],
HL [auth L1],
HN [auth Lf],
HO [auth S2],
HP [auth S2],
HQ [auth S2],
HR [auth S2],
HS [auth S2],
IC [auth L1],
ID [auth L1],
IE [auth L1],
IF [auth L1],
IG [auth L1],
IH [auth L1],
II [auth L1],
IJ [auth L1],
IK [auth L1],
IL [auth L1],
IN [auth Lg],
IO [auth S2],
IP [auth S2],
IQ [auth S2],
IR [auth S2],
IS [auth S2],
JC [auth L1],
JD [auth L1],
JE [auth L1],
JF [auth L1],
JG [auth L1],
JH [auth L1],
JI [auth L1],
JJ [auth L1],
JK [auth L1],
JL [auth L1],
JO [auth S2],
JP [auth S2],
JQ [auth S2],
JR [auth S2],
JS [auth S2],
KC [auth L1],
KD [auth L1],
KE [auth L1],
KF [auth L1],
KG [auth L1],
KH [auth L1],
KI [auth L1],
KJ [auth L1],
KK [auth L1],
KL [auth L1],
KO [auth S2],
KP [auth S2],
KQ [auth S2],
KR [auth S2],
KS [auth S2],
LC [auth L1],
LD [auth L1],
LE [auth L1],
LF [auth L1],
LG [auth L1],
LH [auth L1],
LI [auth L1],
LJ [auth L1],
LK [auth L1],
LL [auth L1],
LO [auth S2],
LP [auth S2],
LQ [auth S2],
LR [auth S2],
LS [auth S2],
MC [auth L1],
MD [auth L1],
ME [auth L1],
MF [auth L1],
MG [auth L1],
MH [auth L1],
MI [auth L1],
MJ [auth L1],
MK [auth L1],
ML [auth L1],
MN [auth Lo],
MO [auth S2],
MP [auth S2],
MQ [auth S2],
MR [auth S2],
MS [auth S2],
NC [auth L1],
ND [auth L1],
NE [auth L1],
NF [auth L1],
NG [auth L1],
NH [auth L1],
NI [auth L1],
NJ [auth L1],
NK [auth L1],
NL [auth L1],
NO [auth S2],
NP [auth S2],
NQ [auth S2],
NR [auth S2],
NS [auth S2],
OC [auth L1],
OD [auth L1],
OE [auth L1],
OF [auth L1],
OG [auth L1],
OH [auth L1],
OI [auth L1],
OJ [auth L1],
OK [auth L1],
OL [auth L1],
OM [auth L1],
OO [auth S2],
OP [auth S2],
OQ [auth S2],
OR [auth S2],
OS [auth S2],
PC [auth L1],
PD [auth L1],
PE [auth L1],
PF [auth L1],
PG [auth L1],
PH [auth L1],
PI [auth L1],
PJ [auth L1],
PK [auth L1],
PL [auth L1],
PM [auth L1],
PN [auth S2],
PO [auth S2],
PP [auth S2],
PQ [auth S2],
PR [auth S2],
PS [auth S2],
QC [auth L1],
QD [auth L1],
QE [auth L1],
QF [auth L1],
QG [auth L1],
QH [auth L1],
QI [auth L1],
QJ [auth L1],
QK [auth L1],
QL [auth L1],
QM [auth L1],
QN [auth S2],
QO [auth S2],
QP [auth S2],
QQ [auth S2],
QR [auth S2],
QS [auth S2],
RC [auth L1],
RD [auth L1],
RE [auth L1],
RF [auth L1],
RG [auth L1],
RH [auth L1],
RI [auth L1],
RJ [auth L1],
RK [auth L1],
RL [auth L1],
RM [auth L2],
RN [auth S2],
RO [auth S2],
RP [auth S2],
RQ [auth S2],
RR [auth S2],
RS [auth S2],
SC [auth L1],
SD [auth L1],
SE [auth L1],
SF [auth L1],
SG [auth L1],
SH [auth L1],
SI [auth L1],
SJ [auth L1],
SK [auth L1],
SL [auth L1],
SM [auth L2],
SN [auth S2],
SO [auth S2],
SP [auth S2],
SQ [auth S2],
SR [auth S2],
SS [auth S2],
TC [auth L1],
TD [auth L1],
TE [auth L1],
TF [auth L1],
TG [auth L1],
TH [auth L1],
TI [auth L1],
TJ [auth L1],
TK [auth L1],
TL [auth L1],
TM [auth L2],
TN [auth S2],
TO [auth S2],
TP [auth S2],
TQ [auth S2],
TR [auth S2],
TS [auth ST],
UC [auth L1],
UD [auth L1],
UE [auth L1],
UF [auth L1],
UG [auth L1],
UH [auth L1],
UI [auth L1],
UJ [auth L1],
UK [auth L1],
UL [auth L1],
UM [auth L3],
UN [auth S2],
UO [auth S2],
UP [auth S2],
UQ [auth S2],
UR [auth S2],
VC [auth L1],
VD [auth L1],
VE [auth L1],
VF [auth L1],
VG [auth L1],
VH [auth L1],
VI [auth L1],
VJ [auth L1],
VK [auth L1],
VL [auth L1],
VM [auth L3],
VN [auth S2],
VO [auth S2],
VP [auth S2],
VQ [auth S2],
VR [auth S2],
VS [auth Sd],
WC [auth L1],
WD [auth L1],
WE [auth L1],
WF [auth L1],
WG [auth L1],
WH [auth L1],
WI [auth L1],
WJ [auth L1],
WK [auth L1],
WL [auth L1],
WM [auth L3],
WN [auth S2],
WO [auth S2],
WP [auth S2],
WQ [auth S2],
WR [auth S2],
XC [auth L1],
XD [auth L1],
XE [auth L1],
XF [auth L1],
XG [auth L1],
XH [auth L1],
XI [auth L1],
XJ [auth L1],
XK [auth L1],
XL [auth L1],
XM [auth L3],
XN [auth S2],
XO [auth S2],
XP [auth S2],
XQ [auth S2],
XR [auth S2],
XS [auth SG],
YC [auth L1],
YD [auth L1],
YE [auth L1],
YF [auth L1],
YG [auth L1],
YH [auth L1],
YI [auth L1],
YJ [auth L1],
YK [auth L1],
YL [auth L1],
YM [auth L3],
YN [auth S2],
YO [auth S2],
YP [auth S2],
YQ [auth S2],
YR [auth S2],
YS [auth SJ],
ZC [auth L1],
ZD [auth L1],
ZE [auth L1],
ZF [auth L1],
ZG [auth L1],
ZH [auth L1],
ZI [auth L1],
ZJ [auth L1],
ZK [auth L1],
ZL [auth L1],
ZM [auth LA],
ZN [auth S2],
ZO [auth S2],
ZP [auth S2],
ZQ [auth S2],
ZR [auth S2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MLZ
Query on MLZ
QA [auth Lo]L-PEPTIDE LINKINGC7 H16 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-05
    Type: Initial release