7XKE

Cryo-EM structure of DHEA-ADGRG2-FL-Gs complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures of the ADGRG2-G s complex in apo and ligand-bound forms.

Lin, H.Xiao, P.Bu, R.Q.Guo, S.Yang, Z.Yuan, D.Zhu, Z.L.Zhang, C.X.He, Q.T.Zhang, C.Ping, Y.Q.Zhao, R.J.Ma, C.S.Liu, C.H.Zhang, X.N.Jiang, D.Huang, S.Xi, Y.T.Zhang, D.L.Xue, C.Y.Yang, B.S.Li, J.Y.Lin, H.C.Zeng, X.H.Zhao, H.Xu, W.M.Yi, F.Liu, Z.Sun, J.P.Yu, X.

(2022) Nat Chem Biol 18: 1196-1203

  • DOI: https://doi.org/10.1038/s41589-022-01084-6
  • Primary Citation of Related Structures:  
    7XKD, 7XKE, 7XKF

  • PubMed Abstract: 

    Adhesion G protein-coupled receptors are elusive in terms of their structural information and ligands. Here, we solved the cryogenic-electron microscopy (cryo-EM) structure of apo-ADGRG2, an essential membrane receptor for maintaining male fertility, in complex with a G s trimer. Whereas the formations of two kinks were determinants of the active state, identification of a potential ligand-binding pocket in ADGRG2 facilitated the screening and identification of dehydroepiandrosterone (DHEA), dehydroepiandrosterone sulfate and deoxycorticosterone as potential ligands of ADGRG2. The cryo-EM structures of DHEA-ADGRG2-G s provided interaction details for DHEA within the seven transmembrane domains of ADGRG2. Collectively, our data provide a structural basis for the activation and signaling of ADGRG2, as well as characterization of steroid hormones as ADGRG2 ligands, which might be used as useful tools for further functional studies of the orphan ADGRG2.


  • Organizational Affiliation

    Key Laboratory of Experimental Teratology of the Ministry of Education, Department of Physiology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
mini-Gs361Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1358Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
Explore P62873 
Go to UniProtKB:  P62873
PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]58Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens)
Explore P59768 
Go to UniProtKB:  P59768
PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
NB35D [auth N]128Camelus bactrianusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Adhesion G-protein coupled receptor G2E [auth R]903Mus musculusMutation(s): 2 
Gene Names: Adgrg2
Membrane Entity: Yes 
UniProt
Find proteins for Q8CJ12 (Mus musculus)
Explore Q8CJ12 
Go to UniProtKB:  Q8CJ12
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UniProt GroupQ8CJ12
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AND (Subject of Investigation/LOI)
Query on AND

Download Ideal Coordinates CCD File 
F [auth R]3-BETA-HYDROXY-5-ANDROSTEN-17-ONE
C19 H28 O2
FMGSKLZLMKYGDP-USOAJAOKSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China92057121
National Natural Science Foundation of China (NSFC)China32130055
National Science Foundation (NSF, China)China81825022
National Natural Science Foundation of China (NSFC)ChinaZR2021ZD18

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-10
    Type: Initial release
  • Version 1.1: 2023-03-15
    Changes: Database references
  • Version 1.2: 2024-10-30
    Changes: Data collection, Structure summary