Download MendeleyPhosphoglycerate mutase 1 complexed with a covalent inhibitor
Jiang, L.L., Zhou, L.To be published.
7XB7
Phosphoglycerate mutase 1 complexed with a covalent inhibitor
- PDB DOI: https://doi.org/10.2210/pdb7XB7/pdb
- Classification: ISOMERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-03-21 Released: 2023-09-27
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.236
- R-Value Work: 0.168
- R-Value Observed: 0.171
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoglycerate mutase 1 | A [auth B], B [auth C] | 262 | Homo sapiens | Mutation(s): 0 Gene Names: PGAM1, PGAMA EC: 5.4.2.11 (PDB Primary Data), 5.4.2.4 (PDB Primary Data) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P18669 (Homo sapiens) Explore P18669 Go to UniProtKB: P18669 | |||||
PHAROS: P18669 GTEx: ENSG00000171314 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P18669 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CKF (Subject of Investigation/LOI) Query on CKF | D [auth B], E [auth C] | 3-[[5-(cyclopenten-1-yl)-2-(methylcarbamoyl)phenyl]sulfamoyl]benzenesulfonic acid C19 H20 N2 O6 S2 SVYGDMRPUQQJMH-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.236
- R-Value Work: 0.168
- R-Value Observed: 0.171
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.276 | α = 90 |
| b = 72.959 | β = 90 |
| c = 167.956 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data scaling |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-27 Deposition Author(s): Jiang, L.L., Zhou, L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 22077019 |
Revision History (Full details and data files)
- Version 1.0: 2023-09-27
Type: Initial release
