7X2P | pdb_00007x2p

Legionella pneumophila effector RavL

PDB DOI: https://doi.org/10.2210/pdb7X2P/pdb

Classification: HYDROLASE
Organism(s): Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-02-26 Released: 2023-03-01
Deposition Author(s): Zheng, J., Lu, Z., Chen, S.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.89 Å
R-Value Free:
0.337 (Depositor), 0.337 (DCC)
R-Value Work:
0.284 (Depositor), 0.284 (DCC)
R-Value Observed:
0.289 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Legionella pneumophila effector RavL

Zheng, J., Lu, Z.

To be published.

Macromolecule Content

Total Structure Weight: 57.27 kDa
Atom Count: 3,408
Modeled Residue Count: 428
Deposited Residue Count: 504
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative lipase	A, B	252	Legionella pneumophila subsp. pneumophila str. Philadelphia 1	Mutation(s): 0 Gene Names: lpg1108
UniProt
Find proteins for Q5ZWH7 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZWH7 Go to UniProtKB: Q5ZWH7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5ZWH7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.89 Å
R-Value Free: 0.337 (Depositor), 0.337 (DCC)
R-Value Work: 0.284 (Depositor), 0.284 (DCC)
R-Value Observed: 0.289 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.377	α = 90
b = 54.247	β = 93.61
c = 128.209	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-03-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-03-01
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.