7WVJ | pdb_00007wvj

NT-mut(K117D,K139D,K145D) TLR3 -poly I:C complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7WVJ

This is version 1.2 of the entry. See complete history

Literature

TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand.

Lim, C.S.Jang, Y.H.Lee, G.Y.Han, G.M.Jeong, H.J.Kim, J.W.Lee, J.O.

(2022) Nat Commun 13: 6876-6876

  • DOI: https://doi.org/10.1038/s41467-022-34602-0
  • Primary Citation Related Structures: 
    7WV3, 7WV4, 7WV5, 7WVE, 7WVF, 7WVJ

  • PubMed Abstract: 

    Toll-like Receptor 3 (TLR3) initiates a potent anti-viral immune response by binding to double-stranded RNA ligands. Previous crystallographic studies showed that TLR3 forms a homodimer when bound to a 46-base pair RNA ligand. However, this short RNA fails to initiate a robust immune response. To obtain structural insights into the length dependency of TLR3 ligands, we determine the cryo-electron microscopy structure of full-length TLR3 in a complex with a synthetic RNA ligand with an average length of ~400 base pairs. In the structure, the dimeric TLR3 units are clustered along the double-stranded RNA helix in a highly organized and cooperative fashion with a uniform inter-dimer spacing of 103 angstroms. The intracellular and transmembrane domains are dispensable for the clustering because their deletion does not interfere with the cluster formation. Our structural observation suggests that ligand-induced clustering of TLR3 dimers triggers the ordered assembly of intracellular signaling adaptors and initiates a robust innate immune response.


  • Organizational Affiliation
    • Department of Life Sciences and POSTECH, Pohang, 37673, Korea.

Macromolecule Content 

  • Total Structure Weight: 185.9 kDa 
  • Atom Count: 12,488 
  • Modeled Residue Count: 1,410 
  • Deposited Residue Count: 1,470 
  • Unique protein chains: 1
  • Unique nucleic acid chains: 2

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Toll-like receptor 3
A, B
689Homo sapiensMutation(s): 3 
Gene Names: TLR3
UniProt & NIH Common Fund Data Resources
Find proteins for O15455 (Homo sapiens)
Explore O15455 
Go to UniProtKB:  O15455
PHAROS:  O15455
GTEx:  ENSG00000164342 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15455
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (46-MER)C [auth E]46synthetic construct
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  (by identity cutoff) 
Entity ID: 3
MoleculeChains LengthOrganismImage
RNA (46-MER)D [auth F]46synthetic construct
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2019M3E5D6066058
National Research Foundation (NRF, Korea)Korea, Republic Of2017M3A9F6029753

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-16
    Type: Initial release
  • Version 1.1: 2022-12-07
    Changes: Database references
  • Version 1.2: 2024-10-30
    Changes: Data collection, Structure summary