7VWO | pdb_00007vwo

TA complex from Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb7VWO/pdb

Classification: TOXIN/ANTITOXIN
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-11-11 Released: 2022-11-16
Deposition Author(s): Eun, H.-J., Lee, B.-J., Lee, J.-Y.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.247 (Depositor), 0.239 (DCC)
R-Value Work:
0.201 (Depositor), 0.214 (DCC)
R-Value Observed:
0.204 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7VWO

This is version 1.1 of the entry. See complete history.

Literature

TA complex from Mycobacterium tuberculosis

Eun, H.-J., Lee, B.-J., Lee, J.-Y.

To be published.

Macromolecule Content

Total Structure Weight: 105.07 kDa
Atom Count: 8,006
Modeled Residue Count: 935
Deposited Residue Count: 936
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribonuclease VapC43	A B C [auth E] D [auth K] E [auth I] A, B, C [auth E], D [auth K], E [auth I], F [auth G]	142	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: vapC43, Rv2872, MTCY274.03 EC: 3.1
UniProt
Find proteins for P9WF55 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WF55 Go to UniProtKB: P9WF55
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P9WF55
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Antitoxin VapB43	G [auth H], H [auth D], I [auth J]	28	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: vapB43, Rv2871, MTCY274.02
UniProt
Find proteins for P9WL41 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WL41 Go to UniProtKB: P9WL41
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P9WL41
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.247 (Depositor), 0.239 (DCC)
R-Value Work: 0.201 (Depositor), 0.214 (DCC)
R-Value Observed: 0.204 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.847	α = 73.16
b = 74.501	β = 70.24
c = 74.882	γ = 70.03

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	2018R1A5A2024425
National Research Foundation (NRF, Korea)	Korea, Republic Of	2021R1F1A1050961
National Research Foundation (NRF, Korea)	Korea, Republic Of	2021 BK21 Plus Project for Medicine, Dentistry and Pharmacy

Revision History (Full details and data files)

Version 1.0: 2022-11-16
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.