7VQ7

The Al-bound AtALMT1 structure at pH 5 (ALMT1Al/pH5)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of ALMT1-mediated aluminum resistance in Arabidopsis.

Wang, J.Yu, X.Ding, Z.J.Zhang, X.Luo, Y.Xu, X.Xie, Y.Li, X.Yuan, T.Zheng, S.J.Yang, W.Guo, J.

(2022) Cell Res 32: 89-98

  • DOI: https://doi.org/10.1038/s41422-021-00587-6
  • Primary Citation of Related Structures:  
    7VOJ, 7VQ3, 7VQ4, 7VQ5, 7VQ7

  • PubMed Abstract: 

    The plant aluminum (Al)-activated malate transporter ALMT1 mediates the efflux of malate to chelate the Al in acidic soils and underlies the plant Al resistance. Here we present cryo-electron microscopy (cryo-EM) structures of Arabidopsis thaliana ALMT1 (AtALMT1) in the apo, malate-bound, and Al-bound states at neutral and/or acidic pH at up to 3.0 Å resolution. The AtALMT1 dimer assembles an anion channel and each subunit contains six transmembrane helices (TMs) and six cytosolic α-helices. Two pairs of Arg residues are located in the center of the channel pore and contribute to malate recognition. Al binds at the extracellular side of AtALMT1 and induces conformational changes of the TM1-2 loop and the TM5-6 loop, resulting in the opening of the extracellular gate. These structures, along with electrophysiological measurements, molecular dynamic simulations, and mutagenesis study in Arabidopsis, elucidate the structural basis for Al-activated malate transport by ALMT1.


  • Organizational Affiliation

    Department of Biophysics, and Department of Pathology of Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aluminum-activated malate transporter 1
A, B
509Arabidopsis thalianaMutation(s): 0 
Gene Names: ALMT1At1g08430T27G7.11
Membrane Entity: Yes 
UniProt
Find proteins for Q9SJE9 (Arabidopsis thaliana)
Explore Q9SJE9 
Go to UniProtKB:  Q9SJE9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9SJE9
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2021-12-01 
  • Deposition Author(s): Wang, J.Q.

Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2020YFA0908501
Ministry of Science and Technology (MoST, China)China2018YFA0508100
Ministry of Science and Technology (MoST, China)China2016YFA0501100
National Natural Science Foundation of China (NSFC)China31870724

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-01
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references
  • Version 1.2: 2024-06-19
    Changes: Data collection