Site-specific GalNAc modification on a MUC1 neoantigen epitope forms a basis for high-affinity antibody binding
Han, Y.B., Xu, L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
14A fab light chain | A [auth C], D [auth A], G [auth F] | 217 | Mus musculus | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
14A fab heavy chain | B [auth D], E [auth B], H | 229 | Mus musculus | Mutation(s): 0  | ![]() |
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Mucin-1 subunit alpha | C [auth G], F [auth E], I | 13 | Homo sapiens | Mutation(s): 0  | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P15941 (Homo sapiens) Explore P15941  Go to UniProtKB:  P15941 | |||||
PHAROS:  P15941 GTEx:  ENSG00000185499  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15941 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NGA (Subject of Investigation/LOI) Query on NGA | J [auth G] | 2-acetamido-2-deoxy-beta-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-JAJWTYFOSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 46.558 | α = 90 |
b = 226.62 | β = 107.69 |
c = 71.071 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data scaling |
Coot | model building |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |