7V4H | pdb_00007v4h

Cryo-EM Structure of Glycine max glutamine synthetase GmGS Beta2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7V4H

This is version 1.2 of the entry. See complete history

Literature

Assembly status transition offers an avenue for activity modulation of a supramolecular enzyme.

Chen, Y.Xu, W.Yu, S.Ni, K.She, G.Ye, X.Xing, Q.Zhao, J.Huang, C.

(2021) Elife 10

  • DOI: https://doi.org/10.7554/eLife.72535
  • Primary Citation Related Structures: 
    7V4H, 7V4I, 7V4J, 7V4K, 7V4L

  • PubMed Abstract: 

    Nature has evolved many supramolecular proteins assembled in certain, sometimes even seemingly oversophisticated, morphological manners. The rationale behind such evolutionary efforts is often poorly understood. Here, we provide atomic-resolution insights into how the dynamic building of a structurally complex enzyme with higher order symmetry offers amenability to intricate regulation. We have established the functional coupling between enzymatic activity and protein morphological states of glutamine synthetase (GS), an old multi-subunit enzyme essential for cellular nitrogen metabolism. Cryo-EM structure determination of GS in both the catalytically active and inactive assembly states allows us to reveal an unanticipated self-assembly-induced disorder-order transition paradigm, in which the remote interactions between two subcomplex entities significantly rigidify the otherwise structurally fluctuating active sites, thereby regulating activity. We further show in vivo evidences that how the enzyme morphology transitions could be modulated by cellular factors on demand. Collectively, our data present an example of how assembly status transition offers an avenue for activity modulation, and sharpens our mechanistic understanding of the complex functional and regulatory properties of supramolecular enzymes.


  • Organizational Affiliation
    • Ministry of Education Key Laboratory for Membrane-less Organelles & Cellular Dynamics, Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.

Macromolecule Content 

  • Total Structure Weight: 391.85 kDa 
  • Atom Count: 27,340 
  • Modeled Residue Count: 3,520 
  • Deposited Residue Count: 3,560 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Glutamine synthetase356Glycine maxMutation(s): 0 
Gene Names: GLYMA_18G041100
EC: 6.3.1.2
UniProt
Find proteins for A0A0R0EVM7 (Glycine max)
Explore A0A0R0EVM7 
Go to UniProtKB:  A0A0R0EVM7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0R0EVM7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-18
    Type: Initial release
  • Version 1.1: 2024-06-12
    Changes: Data collection
  • Version 1.2: 2025-07-02
    Changes: Data collection, Structure summary