7V1O | pdb_00007v1o

Crystal structure of mouse cytosolic sulfotransferase mSULT3A1

PDB DOI: https://doi.org/10.2210/pdb7V1O/pdb

Classification: TRANSFERASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-08-05 Released: 2022-08-10
Deposition Author(s): Teramoto, T., Inada, K., Kakuta, Y.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.267 (Depositor), 0.267 (DCC)
R-Value Work:
0.231 (Depositor), 0.233 (DCC)
R-Value Observed:
0.233 (Depositor)

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Ligand Structure Quality Assessment

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Literature

Crystal structure of SULT3A1, mouse amine N-sulfotransferase

Teramoto, T., Inada, K., Kurogi, K., Sakakibara, Y., Kakuta, Y.

To be published.

Macromolecule Content

Total Structure Weight: 71.5 kDa
Atom Count: 5,026
Modeled Residue Count: 574
Deposited Residue Count: 586
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amine sulfotransferase	A, B	293	Mus musculus	Mutation(s): 2 Gene Names: Sult3a1, St3a1 EC: 2.8.2.3
UniProt
Find proteins for O35403 (Mus musculus) Explore O35403 Go to UniProtKB: O35403
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O35403
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A3P (Subject of Investigation/LOI) Query on A3P Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth B] MOL2 format, chain D [auth A] MOL2 format, chain F [auth B] mmCIF format, chain D [auth A] mmCIF format, chain F [auth B]	D [auth A], F [auth B]	ADENOSINE-3'-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ WHTCPDAXWFLDIH-KQYNXXCUSA-N		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]
5I2 (Subject of Investigation/LOI) Query on 5I2 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B] mmCIF format, chain C [auth A] mmCIF format, chain E [auth B]	C [auth A], E [auth B]	naphthalen-1-amine C₁₀ H₉ N RUFPHBVGCFYCNW-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.267 (Depositor), 0.267 (DCC)
R-Value Work: 0.231 (Depositor), 0.233 (DCC)
R-Value Observed: 0.233 (Depositor)

Space Group: P 6₄ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.44	α = 90
b = 116.44	β = 90
c = 203.31	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing
RESOLVE	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-08-10

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	21K05384

Revision History (Full details and data files)

Version 1.0: 2022-08-10
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

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