7UVL

IgA1 Protease with IgA1 substrate


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A substrate-induced gating mechanism is conserved among Gram-positive IgA1 metalloproteases.

Redzic, J.S.Rahkola, J.Tran, N.Holyoak, T.Lee, E.Martin-Galiano, A.J.Meyer, N.Zheng, H.Eisenmesser, E.

(2022) Commun Biol 5: 1190-1190

  • DOI: https://doi.org/10.1038/s42003-022-04173-3
  • Primary Citation of Related Structures:  
    7UVK, 7UVL

  • PubMed Abstract: 

    The mucosal adaptive immune response is dependent on the production of IgA antibodies and particularly IgA1, yet opportunistic bacteria have evolved mechanisms to specifically block this response by producing IgA1 proteases (IgA1Ps). Our lab was the first to describe the structures of a metal-dependent IgA1P (metallo-IgA1P) produced from Gram-positive Streptococcus pneumoniae both in the absence and presence of its IgA1 substrate through cryo-EM single particle reconstructions. This prior study revealed an active-site gating mechanism reliant on substrate-induced conformational changes to the enzyme that begged the question of whether such a mechanism is conserved among the wider Gram-positive metallo-IgA1P subfamily of virulence factors. Here, we used cryo-EM to characterize the metallo-IgA1P of a more distantly related family member from Gemella haemolysans, an emerging opportunistic pathogen implicated in meningitis, endocarditis, and more recently bacteremia in the elderly. While the substrate-free structures of these two metallo-IgA1Ps exhibit differences in the relative starting positions of the domain responsible for gating substrate, the enzymes have similar domain orientations when bound to IgA1. Together with biochemical studies that indicate these metallo-IgA1Ps have similar binding affinities and activities, these data indicate that metallo-IgA1P binding requires the specific IgA1 substrate to open the enzymes for access to their active site and thus, largely conform to an "induced fit" model.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO, 80045, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
LPXTG-motif cell wall anchor domain proteinA [auth P]1,295Gemella haemolysansMutation(s): 1 
Gene Names: GEMHA0001_0491
UniProt
Find proteins for C5NYF3 (Gemella haemolysans ATCC 10379)
Explore C5NYF3 
Go to UniProtKB:  C5NYF3
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UniProt GroupC5NYF3
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin alpha-1 heavy constantB,
C [auth A]
209Homo sapiensMutation(s): 0 
Gene Names: IGHA1
UniProt & NIH Common Fund Data Resources
Find proteins for P01876 (Homo sapiens)
Explore P01876 
Go to UniProtKB:  P01876
PHAROS:  P01876
GTEx:  ENSG00000211895 
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UniProt GroupP01876
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin alpha-1 light chainD [auth L]219Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin alpha-1 heavy chainE [auth H]232Homo sapiensMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.56 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR21 AI146295

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-23
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Structure summary