7UO6 | pdb_00007uo6

NMR structure of Pheromone-binding protein 2 in Ostrinia furnacalis


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Ostrinia furnacalis PBP2 solution NMR structure: Insight into ligand binding and release mechanisms.

Dahal, S.R.Lewellen, J.L.Ayyappan, S.Chaudhary, B.P.Nukala, V.Mohanty, S.

(2022) Protein Sci 31: e4438-e4438

  • DOI: https://doi.org/10.1002/pro.4438

  • PubMed Abstract: 

    Ostrinia furnacalis is an invasive lepidopteran agricultural pest that relies on olfaction for mating and reproduction. Male moths have an extremely sensitive olfactory system that can detect the sex pheromones emitted by females over a great distance. Pheromone-binding proteins present in the male moth antenna play a key role in the pheromone uptake, transport, and release at the dendritic membrane of the olfactory neuron. Here, we report the first high-resolution NMR structure of a pheromone-binding protein from an Ostrinia species at pH 6.5. The core of the Ostrinia furnacalis PBP2 (OfurPBP2) consists of six helices, α1a (2-14), α1b (16-22), α2 (27-37), α3 (46-60), α4 (70-80), α5 (84-100), and α6 (107-124) surrounding a large hydrophobic pocket. The structure is stabilized by three disulfide bridges, 19-54, 50-108, and 97-117. In contrast to the unstructured C-terminus of other lepidopteran PBPs, the C-terminus of OfurPBP2 folds into an α-helix (α7) at pH 6.5. The protein has nanomolar affinity towards both pheromone isomers. Molecular docking of both pheromones, E-12 and Z-12-tetradecenyl acetate, to OfurPBP2 revealed that the residues Met5, Lys6, Met8, Thr9, Phe12, Phe36, Trp37, Phe76, Ser115, Phe118, Lys119, Ile122, His123, and Ala128 interact with both isomers, while Thr9 formed a hydrogen bond with the acetate head group. NMR structure and thermal unfolding studies with CD suggest that ligand release at pH 4.5 is likely due to the partial unfolding of the protein.


  • Organizational Affiliation
    • Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma, USA.

Macromolecule Content 

  • Total Structure Weight: 16.12 kDa 
  • Atom Count: 1,120 
  • Modeled Residue Count: 144 
  • Deposited Residue Count: 144 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Pheromone binding protein 2144Ostrinia furnacalisMutation(s): 0 
Gene Names: PBP2OfurPBP2
UniProt
Find proteins for E7CCA0 (Ostrinia furnacalis)
Explore E7CCA0 
Go to UniProtKB:  E7CCA0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE7CCA0
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesCHE-1807722
National Science Foundation (NSF, United States)United StatesDBI-1726397
National Science Foundation (NSF, United States)United StatesDMR-1644779

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-15
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Database references, Structure summary