7U2F

G116F Pseudomonas aeruginosa azurin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.225 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural Basis for the Effects of Phenylalanine on Tuning the Reduction Potential of Type 1 Copper in Azurin.

Liu, Y.Marshall, N.M.Yu, S.S.Kim, W.Gao, Y.G.Robinson, H.Nilges, M.J.Zhang, Y.New, S.Y.Lu, Y.

(2023) Inorg Chem 62: 11618-11625

  • DOI: https://doi.org/10.1021/acs.inorgchem.3c01365
  • Primary Citation of Related Structures:  
    7TNC, 7U2F

  • PubMed Abstract: 

    In order to investigate the effects of the secondary coordination sphere in fine-tuning redox potentials ( E °') of type 1 blue copper (T1Cu) in cupredoxins, we have introduced M13F, M44F, and G116F mutations both individually and in combination in the secondary coordination sphere of the T1Cu center of azurin (Az) from Pseudomonas aeruginosa . These variants were found to differentially influence the E °' of T1Cu, with M13F Az decreasing E °', M44F Az increasing E °', and G116F Az showing a negligible effect. In addition, combining the M13F and M44F mutations increases E °' by 26 mV relative to WT-Az, which is very close to the combined effect of E °' by each mutation. Furthermore, combining G116F with either M13F or M44F mutation resulted in negative and positive cooperative effects, respectively. Crystal structures of M13F/M44F-Az, M13F/G116F-Az, and M44F/G116F-Az combined with that of G116F-Az reveal these changes arise from steric effects and fine-tuning of hydrogen bond networks around the copper-binding His117 residue. The insights gained from this study would provide another step toward the development of redox-active proteins with tunable redox properties for many biological and biotechnological applications.


  • Organizational Affiliation

    Department of Chemistry, The University of Texas at Austin, Austin, Texas 78712, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Azurin128Pseudomonas aeruginosaMutation(s): 1 
Gene Names: azuPA4922
UniProt
Find proteins for P00282 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore P00282 
Go to UniProtKB:  P00282
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00282
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.225 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.172α = 90
b = 49.172β = 90
c = 261.961γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2023-03-01 
  • Deposition Author(s): Liu, Y., Lu, Y.

Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesCHE-2201279

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-01
    Type: Initial release
  • Version 1.1: 2023-07-19
    Changes: Database references
  • Version 1.2: 2023-08-02
    Changes: Database references
  • Version 1.3: 2023-10-25
    Changes: Data collection, Refinement description
  • Version 1.4: 2024-11-13
    Changes: Structure summary