7SUL | pdb_00007sul

Crystal structure of the WD-repeat domain of human SEC31A

PDB DOI: https://doi.org/10.2210/pdb7SUL/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2021-11-17 Released: 2021-12-01
Deposition Author(s): Zeng, H., Dong, A., Loppnau, P., Hutchinson, A., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.237 (Depositor), 0.253 (DCC)
R-Value Work:
0.189 (Depositor)
R-Value Observed:
0.190 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 7SUL

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the WD-repeat domain of human SEC31A

Zeng, H., Dong, A., Loppnau, P., Hutchinson, A., Seitova, A., Arrowsmith, C.H., Edwards, A.M., Halabelian, L., Structural Genomics Consortium (SGC)

To be published.

Macromolecule Content

Total Structure Weight: 157.51 kDa
Atom Count: 10,025
Modeled Residue Count: 1,330
Deposited Residue Count: 1,424
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein transport protein Sec31A	A, B, C, D	356	Homo sapiens	Mutation(s): 0 Gene Names: SEC31A, KIAA0905, SEC31L1, HSPC275, HSPC334
UniProt & NIH Common Fund Data Resources
Find proteins for O94979 (Homo sapiens) Explore O94979 Go to UniProtKB: O94979
PHAROS: O94979 GTEx: ENSG00000138674
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O94979
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.237 (Depositor), 0.253 (DCC)
R-Value Work: 0.189 (Depositor)
R-Value Observed: 0.190 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.18	α = 90
b = 156.75	β = 99.48
c = 85.19	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHASER	phasing
BUSTER	refinement
PDB_EXTRACT	data extraction
HKL-3000	data processing
HKL-3000	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-12-01

Deposition Author(s):

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Funding Organization	Location	Grant Number
Other private		--

Revision History (Full details and data files)

Version 1.0: 2021-12-01
Type: Initial release
Version 1.1: 2024-04-03
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.