7STL | pdb_00007stl

Chitin Synthase 2 from Candida albicans at the apo state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7STL

This is version 1.3 of the entry. See complete history

Literature

Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.

Ren, Z.Chhetri, A.Guan, Z.Suo, Y.Yokoyama, K.Lee, S.Y.

(2022) Nat Struct Mol Biol 29: 653-664

  • DOI: https://doi.org/10.1038/s41594-022-00791-x
  • Primary Citation Related Structures: 
    7STL, 7STM, 7STN, 7STO

  • PubMed Abstract: 

    Chitin is an essential component of the fungal cell wall. Chitin synthases (Chss) catalyze chitin formation and translocation across the membrane and are targets of antifungal agents, including nikkomycin Z and polyoxin D. Lack of structural insights into the action of these inhibitors on Chs has hampered their further development to the clinic. We present the cryo-EM structures of Chs2 from Candida albicans (CaChs2) in the apo, substrate-bound, nikkomycin Z-bound, and polyoxin D-bound states. CaChs2 adopts a unique domain-swapped dimer configuration where a conserved motif in the domain-swapped region controls enzyme activity. CaChs2 has a dual regulation mechanism where the chitin translocation tunnel is closed by the extracellular gate and plugged by a lipid molecule in the apo state to prevent non-specific leak. Analyses of substrate and inhibitor binding provide insights into the chemical logic of Chs inhibition, which can guide Chs-targeted antifungal development.


  • Organizational Affiliation
    • Department of Biochemistry, Duke University School of Medicine, Durham, NC, USA.

Macromolecule Content 

  • Total Structure Weight: 244.58 kDa 
  • Atom Count: 13,100 
  • Modeled Residue Count: 1,600 
  • Deposited Residue Count: 2,078 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chitin synthase
A, B
1,039Candida albicansMutation(s): 0 
Gene Names: CHS2CAALFM_CR09020CAorf19.7298
EC: 2.4.1.16
Membrane Entity: Yes 
UniProt
Find proteins for P30572 (Candida albicans)
Explore P30572 
Go to UniProtKB:  P30572
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP30572
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
3PE
(Subject of Investigation/LOI)

Query on 3PE



Download:Ideal Coordinates CCD File
C [auth A]
D [auth A]
E [auth A]
F [auth A]
G [auth B]
C [auth A],
D [auth A],
E [auth A],
F [auth A],
G [auth B],
H [auth B],
I [auth B],
J [auth B]
1,2-Distearoyl-sn-glycerophosphoethanolamine
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)R01GM115729

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-13
    Type: Initial release
  • Version 1.1: 2022-07-27
    Changes: Database references
  • Version 1.2: 2024-06-05
    Changes: Data collection
  • Version 1.3: 2025-06-04
    Changes: Data collection, Structure summary