7SQD | pdb_00007sqd

Cryo-EM structure of the Achromobacter flagellar filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation 3D Report Full Report

Validation slider image for 7SQD

This is version 1.2 of the entry. See complete history

Literature

Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.

Kreutzberger, M.A.B.Sobe, R.C.Sauder, A.B.Chatterjee, S.Pena, A.Wang, F.Giron, J.A.Kiessling, V.Costa, T.R.D.Conticello, V.P.Frankel, G.Kendall, M.M.Scharf, B.E.Egelman, E.H.

(2022) Nat Commun 13: 1422-1422

  • DOI: https://doi.org/10.1038/s41467-022-29069-y
  • Primary Citation Related Structures: 
    7SN4, 7SN7, 7SN9, 7SQD, 7SQJ

  • PubMed Abstract: 

    Flagellar filaments function as the propellers of the bacterial flagellum and their supercoiling is key to motility. The outer domains on the surface of the filament are non-critical for motility in many bacteria and their structures and functions are not conserved. Here, we show the atomic cryo-electron microscopy structures for flagellar filaments from enterohemorrhagic Escherichia coli O157:H7, enteropathogenic E. coli O127:H6, Achromobacter, and Sinorhizobium meliloti, where the outer domains dimerize or tetramerize to form either a sheath or a screw-like surface. These dimers are formed by 180° rotations of half of the outer domains. The outer domain sheath (ODS) plays a role in bacterial motility by stabilizing an intermediate waveform and prolonging the tumbling of E. coli cells. Bacteria with these ODS and screw-like flagellar filaments are commonly found in soil and human intestinal environments of relatively high viscosity suggesting a role for the dimerization in these environments.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.

Macromolecule Content 

  • Total Structure Weight: 2,757.81 kDa 
  • Atom Count: 192,480 
  • Modeled Residue Count: 26,736 
  • Deposited Residue Count: 26,832 
  • Unique protein chains: 1

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM122510

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-16
    Type: Initial release
  • Version 1.1: 2022-03-30
    Changes: Database references
  • Version 1.2: 2024-06-05
    Changes: Data collection