7SHN

Cryo-EM structure of oleoyl-CoA-bound human peroxisomal fatty acid transporter ABCD1

• PDB DOI: https://doi.org/10.2210/pdb7SHN/pdb
• EM Map EMD-25131: EMDB EMDataResource

• Classification: LIPID TRANSPORT
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): Yes 
• Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc


• Deposited: 2021-10-09 Released: 2021-11-03 
• Deposition Author(s): Wang, R., Li, X.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Welch Foundation, Damon Runyon Cancer Research Foundation

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural basis of acyl-CoA transport across the peroxisomal membrane by human ABCD1.

Wang, R., Qin, Y., Li, X.

(2022) Cell Res 32: 214-217

• PubMed: 34754073 
• DOI: https://doi.org/10.1038/s41422-021-00585-8
• Primary Citation of Related Structures:  
  7SHM, 7SHN

---

Organizational Affiliation: 

Department of Molecular Genetics, University of Texas Southwestern Medical Center, Dallas, TX, USA.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 161.28 kDa 
• Atom Count: 9,677 
• Modelled Residue Count: 1,213 
• Deposited Residue Count: 1,430 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family D member 1	A, B	715	Homo sapiens	Mutation(s): 1  Gene Names: ABCD1, ALD EC: 7.6.2.4 (PDB Primary Data), 3.1.2 (UniProt), 7.6.2 (UniProt) Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P33897 (Homo sapiens) Explore P33897  Go to UniProtKB:  P33897
PHAROS:  P33897 GTEx:  ENSG00000101986

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
3VV	C [auth A], D [auth B]	S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name) C39 H68 N7 O17 P3 S XDUHQPOXLUAVEE-BPMMELMSSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-11-03 
Deposition Author(s): Wang, R., Li, X.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--
Welch Foundation	United States	--
Damon Runyon Cancer Research Foundation	United States	--

Revision History  

• Version 1.0: 2021-11-03
  Type: Initial release
  
• Version 1.1: 2021-11-24
  Changes: Database references
• Version 1.2: 2022-02-16
  Changes: Database references
• Version 1.3: 2024-06-05
  Changes: Data collection