7S8P

CryoEM structure of Gq-coupled MRGPRX4 with small molecule agonist MS47134


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure, function and pharmacology of human itch GPCRs.

Cao, C.Kang, H.J.Singh, I.Chen, H.Zhang, C.Ye, W.Hayes, B.W.Liu, J.Gumpper, R.H.Bender, B.J.Slocum, S.T.Krumm, B.E.Lansu, K.McCorvy, J.D.Kroeze, W.K.English, J.G.DiBerto, J.F.Olsen, R.H.J.Huang, X.P.Zhang, S.Liu, Y.Kim, K.Karpiak, J.Jan, L.Y.Abraham, S.N.Jin, J.Shoichet, B.K.Fay, J.F.Roth, B.L.

(2021) Nature 600: 170-175

  • DOI: https://doi.org/10.1038/s41586-021-04126-6
  • Primary Citation of Related Structures:  
    7S8L, 7S8M, 7S8N, 7S8O, 7S8P

  • PubMed Abstract: 

    The MRGPRX family of receptors (MRGPRX1-4) is a family of mas-related G-protein-coupled receptors that have evolved relatively recently 1 . Of these, MRGPRX2 and MRGPRX4 are key physiological and pathological mediators of itch and related mast cell-mediated hypersensitivity reactions 2-5 . MRGPRX2 couples to both G i and G q in mast cells 6 . Here we describe agonist-stabilized structures of MRGPRX2 coupled to G i1 and G q in ternary complexes with the endogenous peptide cortistatin-14 and with a synthetic agonist probe, respectively, and the development of potent antagonist probes for MRGPRX2. We also describe a specific MRGPRX4 agonist and the structure of this agonist in a complex with MRGPRX4 and G q . Together, these findings should accelerate the structure-guided discovery of therapeutic agents for pain, itch and mast cell-mediated hypersensitivity.


  • Organizational Affiliation

    Department of Pharmacology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gs-mini-Gq chimeraA [auth B]246Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1B [auth C]358Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth D]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
scFv16D [auth E]267Mus musculusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Soluble cytochrome b562,Mas-related G-protein coupled receptor member X4 chimeraE [auth R]472Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 3 
Gene Names: cybCMRGPRX4MRGX4SNSR5SNSR6
Membrane Entity: Yes 
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Find proteins for Q96LA9 (Homo sapiens)
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Go to UniProtKB:  Q96LA9
PHAROS:  Q96LA9
GTEx:  ENSG00000179817 
Find proteins for P0ABE7 (Escherichia coli)
Explore P0ABE7 
Go to UniProtKB:  P0ABE7
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UniProt GroupsQ96LA9P0ABE7
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
8IX (Subject of Investigation/LOI)
Query on 8IX

Download Ideal Coordinates CCD File 
F [auth R]N-[(1r,3R,5S,7R)-3,5-dimethyltricyclo[3.3.1.1~3,7~]decane-1-carbonyl]-D-phenylalanine
C22 H29 N O3
QSBRCNGPJBWGLQ-LQDXOGNASA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-17
    Type: Initial release
  • Version 1.1: 2021-12-01
    Changes: Database references
  • Version 1.2: 2021-12-15
    Changes: Database references
  • Version 1.3: 2024-10-30
    Changes: Data collection, Structure summary