7RT0 | pdb_00007rt0

1.80 A resolution structure of MAO from P. nicotinovorans in complex with FAD

PDB DOI: https://doi.org/10.2210/pdb7RT0/pdb

Classification: OXIDOREDUCTASE
Organism(s): Paenarthrobacter nicotinovorans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-08-12 Released: 2021-08-25
Deposition Author(s): Lovell, S., Bowman, A., Battaile, K.P., Deay, D.O.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.193 (Depositor), 0.203 (DCC)
R-Value Work:
0.169 (Depositor), 0.179 (DCC)
R-Value Observed:
0.170 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7RT0

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

To be determined

Bowman, A., Deay, D.O., Battaile, K.P., Lovell, S.

To be published.

Macromolecule Content

Total Structure Weight: 45.46 kDa
Atom Count: 3,153
Modeled Residue Count: 385
Deposited Residue Count: 421
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
4-methylaminobutanoate oxidase (methylamine-forming)	A	421	Paenarthrobacter nicotinovorans	Mutation(s): 0 Gene Names: mao, ORF56 EC: 1.5.3.21
UniProt
Find proteins for Q8GAJ0 (Paenarthrobacter nicotinovorans) Explore Q8GAJ0 Go to UniProtKB: Q8GAJ0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8GAJ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD (Subject of Investigation/LOI) Query on FAD Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
PG4 Query on PG4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.193 (Depositor), 0.203 (DCC)
R-Value Work: 0.169 (Depositor), 0.179 (DCC)
R-Value Observed: 0.170 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 203.302	α = 90
b = 51.74	β = 92.57
c = 45.739	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
CRANK2	phasing
PDB_EXTRACT	data extraction

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

& Funding Information

Deposition Data

Released Date: 2021-08-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2021-08-25
Type: Initial release
Version 1.1: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.