7RJ3 | pdb_00007rj3

Crystal Structure of the Forkhead Associated (FHA) Domain of the Glycogen Accumulation Regulator (GarA) from Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb7RJ3/pdb

Classification: SIGNALING PROTEIN
Organism(s): Mycobacterium tuberculosis
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2021-07-20 Released: 2021-07-28
Deposition Author(s): Minasov, G., Shuvalova, L., Pshenychnyi, S., Dubrovska, I., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free:
0.223 (Depositor), 0.229 (DCC)
R-Value Work:
0.174 (Depositor), 0.185 (DCC)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of the Forkhead Associated (FHA) Domain of the Glycogen Accumulation Regulator (GarA) from Mycobacterium tuberculosis.

Minasov, G., Shuvalova, L., Pshenychnyi, S., Dubrovska, I., Satchell, K.J.F.

To be published.

Macromolecule Content

Total Structure Weight: 60.14 kDa
Atom Count: 2,624
Modeled Residue Count: 311
Deposited Residue Count: 558
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycogen accumulation regulator GarA	A, B, C	186	Mycobacterium tuberculosis	Mutation(s): 0 Gene Names: garA, CAB90_02029
UniProt
Find proteins for P9WJA9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WJA9 Go to UniProtKB: P9WJA9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P9WJA9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download:Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å
R-Value Free: 0.223 (Depositor), 0.229 (DCC)
R-Value Work: 0.174 (Depositor), 0.185 (DCC)
R-Value Observed: 0.177 (Depositor)

Diffraction Data:

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.135	α = 90
b = 56.755	β = 90
c = 92.264	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-07-28

Deposition Author(s):

Pshenychnyi, S.

Satchell, K.J.F.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2021-07-28
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.