7RHS

Cryo-EM structure of apo-state of human CNGA3/CNGB3 channel

  • Classification: TRANSPORT PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 
  • Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc

  • Deposited: 2021-07-18 Released: 2022-03-02 
  • Deposition Author(s): Zheng, X., Yang, J.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Eye Institute (NIH/NEI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the human cone photoreceptor cyclic nucleotide-gated channel.

Zheng, X.Hu, Z.Li, H.Yang, J.

(2022) Nat Struct Mol Biol 29: 40-46

  • DOI: https://doi.org/10.1038/s41594-021-00699-y
  • Primary Citation of Related Structures:  
    7RHS

  • PubMed Abstract: 

    Cyclic nucleotide-gated (CNG) channels transduce light-induced chemical signals into electrical signals in retinal cone and rod photoreceptors. Structures of native CNG channels, which are heterotetramers formed by CNGA and CNGB subunits, have not been obtained. In the present study, we report a high-resolution cryo-electron microscopy structure of the human cone CNG channel in the apo closed state. The channel contains three CNGA3 and one CNGB3 subunits. Arg403 in the pore helix of CNGB3 projects into an asymmetric selectivity filter and forms hydrogen bonds with two pore-lining backbone carbonyl oxygens. Arg442 in S6 of CNGB3 protrudes into and occludes the pore below the hydrophobic cavity gate previously observed in homotetrameric CNGA channels. It is interesting that Arg403Gln is a disease mutation, and Arg442 is replaced by glutamine in some animal species with dichromatic or monochromatic vision. These and other unique structural features and the disease link conferred by CNGB3 indicate a critical role of CNGB3 in shaping cone photoresponses.


  • Organizational Affiliation

    Department of Biological Sciences, Columbia University, New York, NY, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated cation channel alpha-3
A, B, C
706Homo sapiensMutation(s): 0 
Gene Names: CNGA3CNCG3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q16281 (Homo sapiens)
Explore Q16281 
Go to UniProtKB:  Q16281
PHAROS:  Q16281
GTEx:  ENSG00000144191 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16281
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q16281-1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated cation channel beta-3841Homo sapiensMutation(s): 0 
Gene Names: CNGB3
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQW8 (Homo sapiens)
Explore Q9NQW8 
Go to UniProtKB:  Q9NQW8
PHAROS:  Q9NQW8
GTEx:  ENSG00000170289 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NQW8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.93 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTUCSF Chimera

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesRO1GM085234
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesRO1EY027800

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-02
    Type: Initial release
  • Version 1.1: 2024-10-30
    Changes: Data collection, Structure summary