7QUL | pdb_00007qul

Alcohol Dehydrogenase from Thauera aromatica K319A/K320A mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 
    0.274 (Depositor), 0.281 (DCC) 
  • R-Value Work: 
    0.212 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.215 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Advanced Insights into Catalytic and Structural Features of the Zinc-Dependent Alcohol Dehydrogenase from Thauera aromatica.

Stark, F.Loderer, C.Petchey, M.Grogan, G.Ansorge-Schumacher, M.B.

(2022) Chembiochem 23: e202200149-e202200149

  • DOI: https://doi.org/10.1002/cbic.202200149
  • Primary Citation Related Structures: 
    7QUL, 7QUY

  • PubMed Abstract: 

    The asymmetric reduction of ketones to chiral hydroxyl compounds by alcohol dehydrogenases (ADHs) is an established strategy for the provision of valuable precursors for fine chemicals and pharmaceutics. However, most ADHs favor linear aliphatic and aromatic carbonyl compounds, and suitable biocatalysts with preference for cyclic ketones and diketones are still scarce. Among the few candidates, the alcohol dehydrogenase from Thauera aromatica (ThaADH) stands out with a high activity for the reduction of the cyclic α-diketone 1,2-cyclohexanedione to the corresponding α-hydroxy ketone. This study elucidates catalytic and structural features of the enzyme. ThaADH showed a remarkable thermal and pH stability as well as stability in the presence of polar solvents. A thorough description of the substrate scope combined with the resolution and description of the crystal structure, demonstrated a strong preference of ThaADH for cyclic α-substituted cyclohexanones, and indicated structural determinants responsible for the unique substrate acceptance.


  • Organizational Affiliation
    • Professur für Molekulare Biotechnologie, Technische Universität Dresden, 01062, Dresden, Germany.

Macromolecule Content 

  • Total Structure Weight: 37.34 kDa 
  • Atom Count: 2,821 
  • Modeled Residue Count: 351 
  • Deposited Residue Count: 355 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase355Thauera aromaticaMutation(s): 2 
Gene Names: had
EC: 1.1.1.368
UniProt
Find proteins for O87871 (Thauera aromatica)
Explore O87871 
Go to UniProtKB:  O87871
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO87871
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free:  0.274 (Depositor), 0.281 (DCC) 
  • R-Value Work:  0.212 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.215 (Depositor) 
Space Group: I 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.625α = 90
b = 72.892β = 103.59
c = 81.276γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-17
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description