7QFL

Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain II (aa 199-308)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.170 

Starting Model: experimental
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This is version 1.2 of the entry. See complete history


Literature

The molecular architecture of Lactobacillus S-layer: Assembly and attachment to teichoic acids.

Sagmeister, T.Gubensak, N.Buhlheller, C.Grininger, C.Eder, M.Ðordic, A.Millan, C.Medina, A.Murcia, P.A.S.Berni, F.Hynonen, U.Vejzovic, D.Damisch, E.Kulminskaya, N.Petrowitsch, L.Oberer, M.Palva, A.Malanovic, N.Codee, J.Keller, W.Uson, I.Pavkov-Keller, T.

(2024) Proc Natl Acad Sci U S A 121: e2401686121-e2401686121

  • DOI: https://doi.org/10.1073/pnas.2401686121
  • Primary Citation of Related Structures:  
    7QEC, 7QEH, 7QFG, 7QFI, 7QFJ, 7QFK, 7QFL, 7QLD, 7QLE, 7QLH, 8ALU, 8AOL, 8BT9, 8Q1O

  • PubMed Abstract: 

    S-layers are crystalline arrays found on bacterial and archaeal cells. Lactobacillus is a diverse family of bacteria known especially for potential gut health benefits. This study focuses on the S-layer proteins from Lactobacillus acidophilus and Lactobacillus amylovorus common in the mammalian gut. Atomic resolution structures of Lactobacillus S-layer proteins SlpA and SlpX exhibit domain swapping, and the obtained assembly model of the main S-layer protein SlpA aligns well with prior electron microscopy and mutagenesis data. The S-layer's pore size suggests a protective role, with charged areas aiding adhesion. A highly similar domain organization and interaction network are observed across the Lactobacillus genus. Interaction studies revealed conserved binding areas specific for attachment to teichoic acids. The structure of the SlpA S-layer and the suggested incorporation of SlpX as well as its interaction with teichoic acids lay the foundation for deciphering its role in immune responses and for developing effective treatments for a variety of infectious and bacteria-mediated inflammation processes, opening opportunities for targeted engineering of the S-layer or lactobacilli bacteria in general.


  • Organizational Affiliation

    Institute of Molecular Biosciences, University of Graz, Graz, Austria 8010.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
S-layer protein132Lactobacillus acidophilusMutation(s): 0 
Gene Names: slpALBA0169
UniProt
Find proteins for P35829 (Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM))
Explore P35829 
Go to UniProtKB:  P35829
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35829
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.170 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.851α = 90
b = 55.851β = 90
c = 63.732γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustriaP29432

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-21
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Refinement description
  • Version 1.2: 2024-06-19
    Changes: Database references