7QAB

NMR Solution Structure of mussel adhesive protein Pvfp-5b


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Solution structure of recombinant Pvfp-5 beta reveals insights into mussel adhesion.

Morando, M.A.Venturella, F.Sollazzo, M.Monaca, E.Sabbatella, R.Vetri, V.Passantino, R.Pastore, A.Alfano, C.

(2022) Commun Biol 5: 739-739

  • DOI: https://doi.org/10.1038/s42003-022-03699-w
  • Primary Citation of Related Structures:  
    7QAB

  • PubMed Abstract: 

    Some marine organisms can resist to aqueous tidal environments and adhere tightly on wet surface. This behavior has raised increasing attention for potential applications in medicine, biomaterials, and tissue engineering. In mussels, adhesive forces to the rock are the resultant of proteinic fibrous formations called byssus. We present the solution structure of Pvfp-5β, one of the three byssal plaque proteins secreted by the Asian green mussel Perna viridis, and the component responsible for initiating interactions with the substrate. We demonstrate that Pvfp-5β has a stably folded structure in agreement with the presence in the sequence of two EGF motifs. The structure is highly rigid except for a few residues affected by slow local motions in the µs-ms time scale, and differs from the model calculated by artificial intelligence methods for the relative orientation of the EGF modules, which is something where computational methods still underperform. We also show that Pvfp-5β is able to coacervate even with no DOPA modification, giving thus insights both for understanding the adhesion mechanism of adhesive mussel proteins, and developing of biomaterials.


  • Organizational Affiliation

    Structural Biology and Biophysics Unit, Fondazione Ri.MED, 90133, Palermo, Italy.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PVFP-583Perna viridisMutation(s): 0 
UniProt
Find proteins for U5Y6P4 (Perna viridis)
Explore U5Y6P4 
Go to UniProtKB:  U5Y6P4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupU5Y6P4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentCUP G77B17000110001
Other governmentCUP G76G17000130007

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-03
    Type: Initial release
  • Version 1.1: 2022-08-10
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Other
  • Version 1.3: 2024-10-09
    Changes: Data collection, Database references, Structure summary