7PXF

Ca2+ free Drosophila Slo channel


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Small molecule modulation of the Drosophila Slo channel elucidated by cryo-EM.

Raisch, T.Brockmann, A.Ebbinghaus-Kintscher, U.Freigang, J.Gutbrod, O.Kubicek, J.Maertens, B.Hofnagel, O.Raunser, S.

(2021) Nat Commun 12: 7164-7164

  • DOI: https://doi.org/10.1038/s41467-021-27435-w
  • Primary Citation of Related Structures:  
    7PXE, 7PXF, 7PXG, 7PXH

  • PubMed Abstract: 

    Slowpoke (Slo) potassium channels display extraordinarily high conductance, are synergistically activated by a positive transmembrane potential and high intracellular Ca 2+ concentrations and are important targets for insecticides and antiparasitic drugs. However, it is unknown how these compounds modulate ion translocation and whether there are insect-specific binding pockets. Here, we report structures of Drosophila Slo in the Ca 2+ -bound and Ca 2+ -free form and in complex with the fungal neurotoxin verruculogen and the anthelmintic drug emodepside. Whereas the architecture and gating mechanism of Slo channels are conserved, potential insect-specific binding pockets exist. Verruculogen inhibits K + transport by blocking the Ca 2+ -induced activation signal and precludes K + from entering the selectivity filter. Emodepside decreases the conductance by suboptimal K + coordination and uncouples ion gating from Ca 2+ and voltage sensing. Our results expand the mechanistic understanding of Slo regulation and lay the foundation for the rational design of regulators of Slo and other voltage-gated ion channels.


  • Organizational Affiliation

    Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, 44227, Dortmund, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform J of Calcium-activated potassium channel slowpoke
A, B, C, D
1,180Drosophila melanogasterMutation(s): 0 
Gene Names: sloCG10693
Membrane Entity: Yes 
UniProt
Find proteins for Q03720 (Drosophila melanogaster)
Explore Q03720 
Go to UniProtKB:  Q03720
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03720
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19
RECONSTRUCTIONSPHIRE1.3

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-15
    Type: Initial release
  • Version 1.1: 2021-12-22
    Changes: Database references
  • Version 1.2: 2024-07-17
    Changes: Data collection, Refinement description