7PX0 | pdb_00007px0

Drosophila melanogaster Aldehyde Oxidase 1

PDB DOI: https://doi.org/10.2210/pdb7PX0/pdb

Classification: OXIDOREDUCTASE
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-10-07 Released: 2022-11-16
Deposition Author(s): Vilela-Alves, G., Mota, C., Romao, M.J.
Funding Organization(s): Fundacao para a Ciencia e a Tecnologia

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.220 (Depositor), 0.230 (DCC)
R-Value Work:
0.175 (Depositor), 0.184 (DCC)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Drosophila melanogaster's Aldehyde Oxidase 1: The First Invertebrate AOX structure

Vilela-Alves, G., Mota, C., Romao, M.J.

To be published.

Macromolecule Content

Total Structure Weight: 565.3 kDa
Atom Count: 41,321
Modeled Residue Count: 4,990
Deposited Residue Count: 5,092
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldehyde oxidase 1	A, B, C, D	1,273	Drosophila melanogaster	Mutation(s): 0 Gene Names: AOX1, CT42272, DmAO1, Dmel\CG18522, LPO, PO, CG18522, Dmel_CG18522 EC: 1.2.3.8 (PDB Primary Data), 1.2.3.1 (UniProt), 1 (UniProt)
UniProt
Find proteins for Q9VF53 (Drosophila melanogaster) Explore Q9VF53 Go to UniProtKB: Q9VF53
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9VF53
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 7 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD (Subject of Investigation/LOI) Query on FAD Download:Ideal Coordinates CCD File SDF format, chain T [auth B] SDF format, chain KA [auth D] SDF format, chain I [auth A] SDF format, chain DA [auth C] MOL2 format, chain T [auth B] MOL2 format, chain KA [auth D] MOL2 format, chain I [auth A] MOL2 format, chain DA [auth C] mmCIF format, chain T [auth B] mmCIF format, chain KA [auth D] mmCIF format, chain I [auth A] mmCIF format, chain DA [auth C]	DA [auth C], I [auth A], KA [auth D], T [auth B]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain DA [auth C] Focus chain I [auth A] Focus chain KA [auth D] Focus chain T [auth B] Interactions & Density Focus chain DA [auth C] Focus chain I [auth A] Focus chain KA [auth D] Focus chain T [auth B]
MTE (Subject of Investigation/LOI) Query on MTE Download:Ideal Coordinates CCD File SDF format, chain R [auth B] SDF format, chain IA [auth D] SDF format, chain G [auth A] SDF format, chain BA [auth C] MOL2 format, chain R [auth B] MOL2 format, chain IA [auth D] MOL2 format, chain G [auth A] MOL2 format, chain BA [auth C] mmCIF format, chain R [auth B] mmCIF format, chain IA [auth D] mmCIF format, chain G [auth A] mmCIF format, chain BA [auth C]	BA [auth C], G [auth A], IA [auth D], R [auth B]	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER C₁₀ H₁₄ N₅ O₆ P S₂ HPEUEJRPDGMIMY-IFQPEPLCSA-N		Interactions Focus chain BA [auth C] Focus chain G [auth A] Focus chain IA [auth D] Focus chain R [auth B] Interactions & Density Focus chain BA [auth C] Focus chain G [auth A] Focus chain IA [auth D] Focus chain R [auth B]
FES (Subject of Investigation/LOI) Query on FES Download:Ideal Coordinates CCD File SDF format, chain Z [auth C] SDF format, chain Q [auth B] SDF format, chain P [auth B] SDF format, chain HA [auth D] SDF format, chain GA [auth D] SDF format, chain F [auth A] SDF format, chain E [auth A] SDF format, chain AA [auth C] MOL2 format, chain Z [auth C] MOL2 format, chain Q [auth B] MOL2 format, chain P [auth B] MOL2 format, chain HA [auth D] MOL2 format, chain GA [auth D] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] MOL2 format, chain AA [auth C] mmCIF format, chain Z [auth C] mmCIF format, chain Q [auth B] mmCIF format, chain P [auth B] mmCIF format, chain HA [auth D] mmCIF format, chain GA [auth D] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A] mmCIF format, chain AA [auth C]	AA [auth C] E [auth A] F [auth A] GA [auth D] HA [auth D] AA [auth C], E [auth A], F [auth A], GA [auth D], HA [auth D], P [auth B], Q [auth B], Z [auth C]	FE2/S2 (INORGANIC) CLUSTER Fe₂ S₂ NIXDOXVAJZFRNF-UHFFFAOYSA-N		Interactions Focus chain AA [auth C] Focus chain E [auth A] Focus chain F [auth A] Focus chain GA [auth D] Focus chain HA [auth D] Focus chain P [auth B] Focus chain Q [auth B] Focus chain Z [auth C] Interactions & Density Focus chain AA [auth C] Focus chain E [auth A] Focus chain F [auth A] Focus chain GA [auth D] Focus chain HA [auth D] Focus chain P [auth B] Focus chain Q [auth B] Focus chain Z [auth C]
MOS (Subject of Investigation/LOI) Query on MOS Download:Ideal Coordinates CCD File SDF format, chain S [auth B] SDF format, chain JA [auth D] SDF format, chain H [auth A] SDF format, chain CA [auth C] MOL2 format, chain S [auth B] MOL2 format, chain JA [auth D] MOL2 format, chain H [auth A] MOL2 format, chain CA [auth C] mmCIF format, chain S [auth B] mmCIF format, chain JA [auth D] mmCIF format, chain H [auth A] mmCIF format, chain CA [auth C]	CA [auth C], H [auth A], JA [auth D], S [auth B]	DIOXOTHIOMOLYBDENUM(VI) ION H Mo O₂ S BDSRWPHSAKXXRG-UHFFFAOYSA-M		Interactions Focus chain CA [auth C] Focus chain H [auth A] Focus chain JA [auth D] Focus chain S [auth B] Interactions & Density Focus chain CA [auth C] Focus chain H [auth A] Focus chain JA [auth D] Focus chain S [auth B]
PEG Query on PEG Download:Ideal Coordinates CCD File SDF format, chain M [auth A] MOL2 format, chain M [auth A] mmCIF format, chain M [auth A]	M [auth A]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain M [auth A] Interactions & Density Focus chain M [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain Y [auth B] SDF format, chain X [auth B] SDF format, chain W [auth B] SDF format, chain V [auth B] SDF format, chain U [auth B] SDF format, chain O [auth A] SDF format, chain N [auth A] SDF format, chain MA [auth D] SDF format, chain LA [auth D] SDF format, chain L [auth A] SDF format, chain K [auth A] SDF format, chain J [auth A] SDF format, chain FA [auth C] SDF format, chain EA [auth C] MOL2 format, chain Y [auth B] MOL2 format, chain X [auth B] MOL2 format, chain W [auth B] MOL2 format, chain V [auth B] MOL2 format, chain U [auth B] MOL2 format, chain O [auth A] MOL2 format, chain N [auth A] MOL2 format, chain MA [auth D] MOL2 format, chain LA [auth D] MOL2 format, chain L [auth A] MOL2 format, chain K [auth A] MOL2 format, chain J [auth A] MOL2 format, chain FA [auth C] MOL2 format, chain EA [auth C] mmCIF format, chain Y [auth B] mmCIF format, chain X [auth B] mmCIF format, chain W [auth B] mmCIF format, chain V [auth B] mmCIF format, chain U [auth B] mmCIF format, chain O [auth A] mmCIF format, chain N [auth A] mmCIF format, chain MA [auth D] mmCIF format, chain LA [auth D] mmCIF format, chain L [auth A] mmCIF format, chain K [auth A] mmCIF format, chain J [auth A] mmCIF format, chain FA [auth C] mmCIF format, chain EA [auth C]	EA [auth C] FA [auth C] J [auth A] K [auth A] L [auth A] EA [auth C], FA [auth C], J [auth A], K [auth A], L [auth A], LA [auth D], MA [auth D], N [auth A], O [auth A], U [auth B], V [auth B], W [auth B], X [auth B], Y [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain EA [auth C] Focus chain FA [auth C] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain LA [auth D] Focus chain MA [auth D] Focus chain N [auth A] Focus chain O [auth A] Focus chain U [auth B] Focus chain V [auth B] Focus chain W [auth B] Focus chain X [auth B] Focus chain Y [auth B] Interactions & Density Focus chain EA [auth C] Focus chain FA [auth C] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain LA [auth D] Focus chain MA [auth D] Focus chain N [auth A] Focus chain O [auth A] Focus chain U [auth B] Focus chain V [auth B] Focus chain W [auth B] Focus chain X [auth B] Focus chain Y [auth B]
NH4 Query on NH4 Download:Ideal Coordinates CCD File SDF format, chain NA [auth D] MOL2 format, chain NA [auth D] mmCIF format, chain NA [auth D]	NA [auth D]	AMMONIUM ION H₄ N QGZKDVFQNNGYKY-UHFFFAOYSA-O		Interactions Focus chain NA [auth D] Interactions & Density Focus chain NA [auth D]