7PIZ | pdb_00007piz

The structure of phosphoglucomutase from Candida albicans

PDB DOI: https://doi.org/10.2210/pdb7PIZ/pdb

Classification: ISOMERASE
Organism(s): Candida albicans P75010
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-08-23 Released: 2022-09-07
Deposition Author(s): Yan, K., van Aalten, D.M.F.
Funding Organization(s): Wellcome Trust, Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.259 (Depositor), 0.258 (DCC)
R-Value Work:
0.196 (Depositor), 0.196 (DCC)
R-Value Observed:
0.199 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Targeting an essential step in the biosynthetic pathway of uridine diphosphate glucose in Aspergillus fumigatus

Yan, K., Stanley, M., Kowalski, B., Raimi, O.G., Ferenbach, A.T., Wei, P., Yuan, H., Fang, W., van Aalten, D.M.F.

To be published.

Macromolecule Content

Total Structure Weight: 125.06 kDa
Atom Count: 9,970
Modeled Residue Count: 1,098
Deposited Residue Count: 1,130
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoglucomutase	A [auth C], B	565	Candida albicans P75010	Mutation(s): 0 EC: 5.4.2.2
UniProt
Find proteins for A0A1D8PSA9 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore A0A1D8PSA9 Go to UniProtKB: A0A1D8PSA9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1D8PSA9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C SDF format, chain D [auth B] SDF format, chain E [auth B] SDF format, chain F [auth B] SDF format, chain G [auth B] MOL2 format, chain C MOL2 format, chain D [auth B] MOL2 format, chain E [auth B] MOL2 format, chain F [auth B] MOL2 format, chain G [auth B] mmCIF format, chain C mmCIF format, chain D [auth B] mmCIF format, chain E [auth B] mmCIF format, chain F [auth B] mmCIF format, chain G [auth B]	C, D [auth B], E [auth B], F [auth B], G [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B] Interactions & Density Focus chain C Focus chain D [auth B] Focus chain E [auth B] Focus chain F [auth B] Focus chain G [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.259 (Depositor), 0.258 (DCC)
R-Value Work: 0.196 (Depositor), 0.196 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.95	α = 90
b = 86.841	β = 92.8
c = 109.92	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-09-07

Deposition Author(s):

van Aalten, D.M.F.

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	200208/Z/15/Z
Medical Research Council (MRC, United Kingdom)	United Kingdom	V001094

Revision History (Full details and data files)

Version 1.0: 2022-09-07
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.