7P2L

thermostabilised 7TM domain of human mGlu5 receptor bound to photoswitchable ligand alloswitch-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Agonists and allosteric modulators promote signaling from different metabotropic glutamate receptor 5 conformations.

Nasrallah, C.Cannone, G.Briot, J.Rottier, K.Berizzi, A.E.Huang, C.Y.Quast, R.B.Hoh, F.Baneres, J.L.Malhaire, F.Berto, L.Dumazer, A.Font-Ingles, J.Gomez-Santacana, X.Catena, J.Kniazeff, J.Goudet, C.Llebaria, A.Pin, J.P.Vinothkumar, K.R.Lebon, G.

(2021) Cell Rep 36: 109648-109648

  • DOI: https://doi.org/10.1016/j.celrep.2021.109648
  • Primary Citation of Related Structures:  
    7FD8, 7FD9, 7P2L

  • PubMed Abstract: 

    Metabotropic glutamate receptors (mGluRs) are dimeric G-protein-coupled receptors activated by the main excitatory neurotransmitter, L-glutamate. mGluR activation by agonists binding in the venus flytrap domain is regulated by positive (PAM) or negative (NAM) allosteric modulators binding to the 7-transmembrane domain (7TM). We report the cryo-electron microscopy structures of fully inactive and intermediate-active conformations of mGlu 5 receptor bound to an antagonist and a NAM or an agonist and a PAM, respectively, as well as the crystal structure of the 7TM bound to a photoswitchable NAM. The agonist induces a large movement between the subunits, bringing the 7TMs together and stabilizing a 7TM conformation structurally similar to the inactive state. Using functional approaches, we demonstrate that the PAM stabilizes a 7TM active conformation independent of the conformational changes induced by agonists, representing an alternative mode of mGlu activation. These findings provide a structural basis for different mGluR activation modes.


  • Organizational Affiliation

    IGF, Université de Montpellier, CNRS, INSERM, 34094 Montpellier, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5464Homo sapiensTequatrovirus T4Mutation(s): 10 
Gene Names: GRM5GPRC1EMGLUR5
EC: 3.2.1.17
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P41594 (Homo sapiens)
Explore P41594 
Go to UniProtKB:  P41594
GTEx:  ENSG00000168959 
Find proteins for P00720 (Enterobacteria phage T4)
Explore P00720 
Go to UniProtKB:  P00720
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP41594P00720
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
4YI (Subject of Investigation/LOI)
Query on 4YI

Download Ideal Coordinates CCD File 
B [auth A]2-chloranyl-~{N}-[2-methoxy-4-[(~{E})-pyridin-2-yldiazenyl]phenyl]benzamide
C19 H15 Cl N4 O2
JJRNGNCTPCWXGM-WCWDXBQESA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
YCM
Query on YCM
A
L-PEPTIDE LINKINGC5 H10 N2 O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 141.69α = 90
b = 43.4β = 99.38
c = 82.12γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Centre National de la Recherche Scientifique (CNRS)FranceATIP AVENIR
Agence Nationale de la Recherche (ANR)FranceANR-20-CE11-0019

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-08
    Type: Initial release
  • Version 1.1: 2021-10-13
    Changes: Data collection, Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description