Characterization of Thiamine Diphosphate-Dependent 4-Hydroxybenzoylformate Decarboxylase Enzymes from
Wei, Z., Wilkinson, R.C., Rashid, G.M.M., Brown, D., Fulop, V., Bugg, T.D.H.(2019) Biochemistry 58: 5281-5293
Experimental Data Snapshot
Starting Model: experimental
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(2019) Biochemistry 58: 5281-5293
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Probable benzoylformate decarboxylase | A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD] | 531 | Rhodococcus jostii RHA1 | Mutation(s): 0  Gene Names: RHA1_ro02985 EC: 4.1.1.7 | |
UniProt | |||||
Find proteins for Q0SCE8 (Rhodococcus jostii (strain RHA1)) Explore Q0SCE8  Go to UniProtKB:  Q0SCE8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q0SCE8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TPP (Subject of Investigation/LOI) Query on TPP | E [auth AAA], G [auth BBB], I [auth CCC], K [auth DDD] | THIAMINE DIPHOSPHATE C12 H19 N4 O7 P2 S AYEKOFBPNLCAJY-UHFFFAOYSA-O | |||
NA Query on NA | F [auth AAA], H [auth BBB], J [auth CCC], L [auth DDD] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD] | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 123.5 | α = 90 |
b = 132.24 | β = 90 |
c = 138.7 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/M025772/1 |
Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/M003523/1 |