Download MendeleyA crystallography-based study of fragment extensions into the 14-3-3 binding groove
Centorrino, F., Wu, Q., Cossar, P., Brunsveld, L., Ottmann, C.To be published.
7OR3
Ternary complex of 14-3-3 sigma, NotchpS1917 phosphopeptide, and WQ136
- PDB DOI: https://doi.org/10.2210/pdb7OR3/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2021-06-04 Released: 2022-06-22
- Funding Organization(s): H2020 Marie Curie Actions of the European Commission
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.247 (Depositor), 0.250 (DCC)
- R-Value Work: 0.222 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.224 (Depositor)
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 14-3-3 protein sigma | 253 | Homo sapiens | Mutation(s): 0 Gene Names: SFN, HME1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31947 (Homo sapiens) Explore P31947 Go to UniProtKB: P31947 | |||||
PHAROS: P31947 GTEx: ENSG00000175793 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P31947 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Neurogenic locus notch homolog protein 4 | 11 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99466 (Homo sapiens) Explore Q99466 Go to UniProtKB: Q99466 | |||||
PHAROS: Q99466 GTEx: ENSG00000204301 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q99466 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 0AW (Subject of Investigation/LOI) Query on 0AW | E [auth A], F [auth A], G [auth A] | ~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl)methyl]-2,3-dihydro-1-benzofuran-5-carboxamide C21 H19 N3 O2 S OKYRJCCVSZQTDE-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSO Query on CSO | A | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
| SEP Query on SEP | B | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.247 (Depositor), 0.250 (DCC)
- R-Value Work: 0.222 (Depositor), 0.220 (DCC)
- R-Value Observed: 0.224 (Depositor)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.458 | α = 90 |
| b = 111.313 | β = 90 |
| c = 62.169 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| DIALS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-06-22 Deposition Author(s): Centorrino, F., Wu, Q., Ottmann, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| H2020 Marie Curie Actions of the European Commission | European Union | 675179 |
Revision History (Full details and data files)
- Version 1.0: 2022-06-22
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Refinement description - Version 1.2: 2024-11-13
Changes: Structure summary
